#include <REMORA_DataStruct.H>

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Public Member Functions
void	init_params (int ncons, int nscalar, const amrex::Vector< std::string > &cons_names)
	read in and initialize parameters

void	display ()

Static Public Member Functions
static BulkForcingType	parse_bulk_forcing_type (const std::string &type_string, const std::string &param_name, bool allow_computed)

Public Attributes
std::string	pp_prefix {"remora"}

bool	use_salt = true

bool	use_coriolis = false

bool	use_prestep = true

bool	use_uv3dmix = true

bool	use_baroclinic = true

bool	use_curvilinear_grid = false

bool	bulk_fluxes = false

BulkFluxScheme	bulk_flux_scheme = BulkFluxScheme::coare30

bool	atm2ocn_flux_mode = false

bool	output_forcing = false

bool	do_temp_flux = false

bool	do_salt_flux = false

bool	longwave_down = false

std::array< BulkForcingType, BulkFlux::NumTypes >	bulk_flux_type

std::array< bool, BulkFlux::NumTypes >	bulk_flux_type_specified {}

std::array< bool, BulkFlux::NumTypes >	bulk_flux_value_specified {}

bool	longwave_is_net = false

bool	qair_is_percent = false

std::string	longwave_netcdf_varname = "lwrad"

bool	do_rivers = false

bool	do_rivers_temp = true

bool	do_rivers_salt = true

bool	do_rivers_scalar = false

amrex::Vector< int >	do_rivers_cons

bool	init_l1ad_T = false

bool	init_ana_T = false

bool	init_l0int_T = true

AdvectionScheme	tracer_Hadv_scheme

AdvectionScheme	uv_Hadv_scheme

CouplingType	coupling_type

IC_Type	ic_type

Cor_Type	coriolis_type

SMFluxType	smflux_type

WindType	wind_type

EOSType	eos_type

BottomStressType	bottom_stress_type

MaskType	mask_type

bool	do_check_mask_consistency = false

MaskConsistency	mask_consistency

VertMixingType	vert_mixing_type

HorizMixingType	horiz_mixing_type

ScaledToGridAMRScaling	scaled_to_grid_amr_scaling = ScaledToGridAMRScaling::none

GLS_StabilityType	gls_stability_type

HarmonicMixingType	harmonic_mixing_type

GridScaleType	grid_scale_type

amrex::Real	theta_s = amrex::Real(3.0)

amrex::Real	theta_b = zero

amrex::Real	tcline = amrex::Real(150.0)

amrex::Real	rdrag = amrex::Real(3e-4)

amrex::Real	rdrag2 = amrex::Real(3e-3)

amrex::Real	Zob = amrex::Real(2e-2)

amrex::Real	Zos = amrex::Real(2e-2)

amrex::Real	Cdb_max = amrex::Real(0.5)

amrex::Real	Cdb_min = amrex::Real(1e-6)

amrex::Real	R0 = amrex::Real(1028)

amrex::Real	S0 = amrex::Real(35.0)

amrex::Real	T0 = amrex::Real(5.0)

amrex::Real	Tcoef = amrex::Real(1.7e-4)

amrex::Real	Scoef = zero

amrex::Real	rho0 = amrex::Real(1025.0)

amrex::Real	g = amrex::Real(9.80665)

double	time_ref = 0.0

amrex::Real	coriolis_f0 = zero

amrex::Real	coriolis_beta = zero

amrex::Real	Pair = amrex::Real(1013.48)

amrex::Real	Tair = amrex::Real(23.567)

amrex::Real	Hair = amrex::Real(0.776)

amrex::Real	cloud = zero

amrex::Real	rain = zero

amrex::Real	blk_ZQ = amrex::Real(10.0)

amrex::Real	blk_ZT = amrex::Real(10.0)

amrex::Real	blk_ZW = amrex::Real(10.0)

bool	eminusp = false

bool	eminusp_correct_ssh = false

amrex::Real	srflux = zero

amrex::Real	Uwind = zero

amrex::Real	Vwind = zero

amrex::Real	longwave_rad = zero

amrex::Real	EminusP = zero

amrex::Real	visc2 = zero

amrex::Vector< amrex::Real >	tnu2

amrex::Real	gls_p = amrex::Real(3.0)

amrex::Real	gls_m = amrex::Real(1.5)

amrex::Real	gls_n = amrex::Real(-1.0)

amrex::Real	gls_Kmin = amrex::Real(7.6e-6)

amrex::Real	gls_Pmin = amrex::Real(1.0e-12)

bool	gls_length_cap = true

amrex::Real	gls_cmu0 = amrex::Real(0.5477)

amrex::Real	gls_c1 = amrex::Real(1.44)

amrex::Real	gls_c2 = amrex::Real(1.92)

amrex::Real	gls_c3m = amrex::Real(-0.4)

amrex::Real	gls_c3p = one

amrex::Real	gls_sigk = one

amrex::Real	gls_sigp = amrex::Real(1.3)

amrex::Real	Akk_bak = amrex::Real(5.0e-6)

amrex::Real	Akp_bak = amrex::Real(5.0e-6)

amrex::Real	Akv_bak = amrex::Real(5.0e-6)

amrex::Real	Akt_bak_all = amrex::Real(1.0e-6)

amrex::Vector< amrex::Real >	Akt_bak

amrex::Real	gls_Gh0

amrex::Real	gls_Ghcri

amrex::Real	gls_Ghmin = amrex::Real(-0.28)

amrex::Real	gls_E2 = amrex::Real(1.33)

amrex::Real	gls_L1

amrex::Real	gls_L2

amrex::Real	gls_L3

amrex::Real	gls_L4

amrex::Real	gls_L5

amrex::Real	gls_L6

amrex::Real	gls_L7

amrex::Real	gls_L8

amrex::Real	my_A1 = amrex::Real(0.92)

amrex::Real	my_A2 = amrex::Real(0.74)

amrex::Real	my_B1 = amrex::Real(16.6)

amrex::Real	my_B2 = amrex::Real(10.1)

amrex::Real	my_C1 = amrex::Real(0.08)

amrex::Real	my_C2 = amrex::Real(0.7)

amrex::Real	my_C3 = amrex::Real(0.2)

amrex::Real	my_E1 = amrex::Real(1.8)

amrex::Real	my_E2 = amrex::Real(1.33)

amrex::Real	my_Gh0 = amrex::Real(0.0233)

amrex::Real	my_Sq = amrex::Real(0.2)

amrex::Real	my_dtfac = amrex::Real(0.05)

amrex::Real	my_lmax = amrex::Real(0.53)

amrex::Real	my_qmin = amrex::Real(1.0E-8)

amrex::Vector< amrex::Real >	nudg_coeff

amrex::Real	obcfac = zero

bool	do_m2_clim_nudg = false

bool	do_m3_clim_nudg = false

amrex::Vector< int >	do_cons_clim_nudg

bool	do_any_cons_clim_nudg = false

bool	do_any_clim_nudg = false

bool	boundary_from_netcdf = false

Detailed Description

Definition at line 110 of file REMORA_DataStruct.H.

Member Function Documentation

◆ display()

void SolverChoice::display ( )

inline

Definition at line 825 of file REMORA_DataStruct.H.

◆ init_params()

void SolverChoice::init_params	(	int	ncons,
		int	nscalar,
		const amrex::Vector< std::string > &	cons_names
	)

inline

read in and initialize parameters

Definition at line 137 of file REMORA_DataStruct.H.

Referenced by REMORA::ReadParameters().

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◆ parse_bulk_forcing_type()

static BulkForcingType SolverChoice::parse_bulk_forcing_type	(	const std::string &	type_string,
		const std::string &	param_name,
		bool	allow_computed
	)

inlinestatic

Definition at line 112 of file REMORA_DataStruct.H.

Referenced by init_params().

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Member Data Documentation

◆ Akk_bak

amrex::Real SolverChoice::Akk_bak = amrex::Real(5.0e-6)

Definition at line 1074 of file REMORA_DataStruct.H.

Referenced by REMORA::gls_corrector(), init_params(), and REMORA::init_stuff().

◆ Akp_bak

amrex::Real SolverChoice::Akp_bak = amrex::Real(5.0e-6)

Definition at line 1075 of file REMORA_DataStruct.H.

Referenced by REMORA::gls_corrector(), init_params(), and REMORA::init_stuff().

◆ Akt_bak

amrex::Vector<amrex::Real> SolverChoice::Akt_bak

Definition at line 1081 of file REMORA_DataStruct.H.

Referenced by REMORA::gls_corrector(), init_params(), and REMORA::set_analytic_vmix().

◆ Akt_bak_all

amrex::Real SolverChoice::Akt_bak_all = amrex::Real(1.0e-6)

Definition at line 1078 of file REMORA_DataStruct.H.

Referenced by init_params().

◆ Akv_bak

amrex::Real SolverChoice::Akv_bak = amrex::Real(5.0e-6)

Definition at line 1076 of file REMORA_DataStruct.H.

Referenced by REMORA::gls_corrector(), init_params(), and REMORA::set_analytic_vmix().

◆ atm2ocn_flux_mode

bool SolverChoice::atm2ocn_flux_mode = false

Definition at line 898 of file REMORA_DataStruct.H.

Referenced by init_params(), REMORA::init_stuff(), and REMORA::WritePlotFile().

◆ blk_ZQ

amrex::Real SolverChoice::blk_ZQ = amrex::Real(10.0)

Definition at line 1033 of file REMORA_DataStruct.H.

Referenced by REMORA::bulk_fluxes(), and init_params().

◆ blk_ZT

amrex::Real SolverChoice::blk_ZT = amrex::Real(10.0)

Definition at line 1034 of file REMORA_DataStruct.H.

Referenced by REMORA::bulk_fluxes(), and init_params().

◆ blk_ZW

amrex::Real SolverChoice::blk_ZW = amrex::Real(10.0)

Definition at line 1035 of file REMORA_DataStruct.H.

Referenced by REMORA::bulk_fluxes(), and init_params().

◆ bottom_stress_type

BottomStressType SolverChoice::bottom_stress_type

Definition at line 966 of file REMORA_DataStruct.H.

Referenced by init_params(), REMORA::init_stuff(), REMORA::ReadCheckpointFile(), REMORA::setup_step(), and REMORA::WriteCheckpointFile().

◆ boundary_from_netcdf

bool SolverChoice::boundary_from_netcdf = false

Definition at line 1130 of file REMORA_DataStruct.H.

Referenced by REMORA::advance_3d(), REMORA::FillCoarsePatchMap(), REMORA::FillPatch(), REMORA::init_bcs(), REMORA::init_only(), REMORA::init_zeta_from_netcdf(), and REMORA::MakeNewLevelFromCoarse().

◆ bulk_flux_scheme

BulkFluxScheme SolverChoice::bulk_flux_scheme = BulkFluxScheme::coare30

Definition at line 897 of file REMORA_DataStruct.H.

Referenced by REMORA::bulk_fluxes(), and init_params().

◆ bulk_flux_type

std::array<BulkForcingType, BulkFlux::NumTypes> SolverChoice::bulk_flux_type

Initial value:

{{
        BulkForcingType::analytic, 
        BulkForcingType::analytic, 
        BulkForcingType::constant, 
        BulkForcingType::constant, 
        BulkForcingType::constant, 
        BulkForcingType::constant, 
        BulkForcingType::constant, 
        BulkForcingType::constant, 
        BulkForcingType::computed, 
        BulkForcingType::computed  
    }}

Definition at line 905 of file REMORA_DataStruct.H.

Referenced by REMORA::bulk_fluxes(), REMORA::init_only(), init_params(), REMORA::set_surface_state(), REMORA::set_zeta_to_Ztavg(), REMORA::SetLongwaveFromDriver(), and REMORA::setup_step().

◆ bulk_flux_type_specified

std::array<bool, BulkFlux::NumTypes> SolverChoice::bulk_flux_type_specified {}

Definition at line 924 of file REMORA_DataStruct.H.

Referenced by REMORA::GetDeckConfiguredAtmosStateLanes(), and init_params().

◆ bulk_flux_value_specified

std::array<bool, BulkFlux::NumTypes> SolverChoice::bulk_flux_value_specified {}

Definition at line 925 of file REMORA_DataStruct.H.

Referenced by REMORA::GetDeckConfiguredAtmosStateLanes(), and init_params().

◆ bulk_fluxes

bool SolverChoice::bulk_fluxes = false

Definition at line 892 of file REMORA_DataStruct.H.

Referenced by REMORA::advance_biology(), init_params(), REMORA::init_stuff(), REMORA::nonlin_eos(), REMORA::setup_step(), and REMORA::WritePlotFile().

◆ Cdb_max

amrex::Real SolverChoice::Cdb_max = amrex::Real(0.5)

Definition at line 999 of file REMORA_DataStruct.H.

Referenced by init_params(), and REMORA::setup_step().

◆ Cdb_min

amrex::Real SolverChoice::Cdb_min = amrex::Real(1e-6)

Definition at line 1000 of file REMORA_DataStruct.H.

Referenced by init_params(), and REMORA::setup_step().

◆ cloud

amrex::Real SolverChoice::cloud = zero

Definition at line 1029 of file REMORA_DataStruct.H.

Referenced by init_params(), and REMORA::init_stuff().

◆ coriolis_beta

amrex::Real SolverChoice::coriolis_beta = zero

Definition at line 1020 of file REMORA_DataStruct.H.

Referenced by REMORA::init_beta_plane_coriolis(), and init_params().

◆ coriolis_f0

amrex::Real SolverChoice::coriolis_f0 = zero

Definition at line 1019 of file REMORA_DataStruct.H.

Referenced by REMORA::init_beta_plane_coriolis(), and init_params().

◆ coriolis_type

Cor_Type SolverChoice::coriolis_type

Definition at line 954 of file REMORA_DataStruct.H.

Referenced by display(), init_params(), REMORA::ReadParameters(), and REMORA::set_coriolis().

◆ coupling_type

CouplingType SolverChoice::coupling_type

Definition at line 948 of file REMORA_DataStruct.H.

Referenced by REMORA::Advance(), REMORA::advance_3d(), REMORA::define_flux_register(), display(), init_params(), REMORA::InitData(), REMORA::post_timestep(), REMORA::reflux_to(), REMORA::timeStep(), and REMORA::timeStepML().

◆ do_any_clim_nudg

bool SolverChoice::do_any_clim_nudg = false

Definition at line 1128 of file REMORA_DataStruct.H.

Referenced by REMORA::init_clim_nudg_coeff(), REMORA::init_only(), and init_params().

◆ do_any_cons_clim_nudg

bool SolverChoice::do_any_cons_clim_nudg = false

Definition at line 1127 of file REMORA_DataStruct.H.

Referenced by init_params().

◆ do_check_mask_consistency

bool SolverChoice::do_check_mask_consistency = false

Definition at line 972 of file REMORA_DataStruct.H.

Referenced by REMORA::check_mask_consistency(), and init_params().

◆ do_cons_clim_nudg

amrex::Vector<int> SolverChoice::do_cons_clim_nudg

Definition at line 1126 of file REMORA_DataStruct.H.

Referenced by REMORA::advance_3d(), REMORA::init_clim_nudg_coeff_from_netcdf(), REMORA::init_only(), and init_params().

◆ do_m2_clim_nudg

bool SolverChoice::do_m2_clim_nudg = false

Definition at line 1122 of file REMORA_DataStruct.H.

Referenced by REMORA::advance_2d(), REMORA::init_clim_nudg_coeff_from_netcdf(), REMORA::init_only(), and init_params().

◆ do_m3_clim_nudg

bool SolverChoice::do_m3_clim_nudg = false

Definition at line 1123 of file REMORA_DataStruct.H.

Referenced by REMORA::init_clim_nudg_coeff_from_netcdf(), REMORA::init_only(), init_params(), and REMORA::setup_step().

◆ do_rivers

bool SolverChoice::do_rivers = false

Definition at line 932 of file REMORA_DataStruct.H.

Referenced by REMORA::advance_2d(), REMORA::advance_3d(), REMORA::init_only(), init_params(), REMORA::init_stuff(), REMORA::MakeNewLevelFromCoarse(), REMORA::prestep(), REMORA::prestep_t_advection(), REMORA::RemakeLevel(), and REMORA::rhs_t_3d().

◆ do_rivers_cons

amrex::Vector<int> SolverChoice::do_rivers_cons

Definition at line 936 of file REMORA_DataStruct.H.

Referenced by REMORA::advance_3d(), REMORA::init_only(), init_params(), and REMORA::prestep().

◆ do_rivers_salt

bool SolverChoice::do_rivers_salt = true

Definition at line 934 of file REMORA_DataStruct.H.

Referenced by init_params().

◆ do_rivers_scalar

bool SolverChoice::do_rivers_scalar = false

Definition at line 935 of file REMORA_DataStruct.H.

Referenced by init_params().

◆ do_rivers_temp

bool SolverChoice::do_rivers_temp = true

Definition at line 933 of file REMORA_DataStruct.H.

Referenced by init_params().

◆ do_salt_flux

bool SolverChoice::do_salt_flux = false

Definition at line 902 of file REMORA_DataStruct.H.

Referenced by init_params(), and REMORA::setup_step().

◆ do_temp_flux

bool SolverChoice::do_temp_flux = false

Definition at line 901 of file REMORA_DataStruct.H.

Referenced by init_params(), and REMORA::setup_step().

◆ eminusp

bool SolverChoice::eminusp = false

Definition at line 1037 of file REMORA_DataStruct.H.

Referenced by REMORA::bulk_fluxes(), init_params(), and REMORA::set_zeta_to_Ztavg().

◆ EminusP

amrex::Real SolverChoice::EminusP = zero

Definition at line 1048 of file REMORA_DataStruct.H.

Referenced by init_params(), and REMORA::init_stuff().

◆ eminusp_correct_ssh

bool SolverChoice::eminusp_correct_ssh = false

Definition at line 1038 of file REMORA_DataStruct.H.

Referenced by init_params(), and REMORA::set_zeta_to_Ztavg().

◆ eos_type

EOSType SolverChoice::eos_type

Definition at line 963 of file REMORA_DataStruct.H.

Referenced by init_params(), and REMORA::rho_eos().

◆ g

amrex::Real SolverChoice::g = amrex::Real(9.80665)

Definition at line 1009 of file REMORA_DataStruct.H.

Referenced by REMORA::advance_2d(), REMORA::bulk_fluxes(), REMORA::estTimeStep(), REMORA::fill_from_bdyfiles(), init_params(), REMORA::lin_eos(), REMORA::nonlin_eos(), and REMORA::prsgrd().

◆ gls_c1

amrex::Real SolverChoice::gls_c1 = amrex::Real(1.44)

Definition at line 1066 of file REMORA_DataStruct.H.

Referenced by REMORA::gls_corrector(), and init_params().

◆ gls_c2

amrex::Real SolverChoice::gls_c2 = amrex::Real(1.92)

Definition at line 1067 of file REMORA_DataStruct.H.

Referenced by REMORA::gls_corrector(), and init_params().

◆ gls_c3m

amrex::Real SolverChoice::gls_c3m = amrex::Real(-0.4)

Definition at line 1068 of file REMORA_DataStruct.H.

Referenced by REMORA::gls_corrector(), and init_params().

◆ gls_c3p

amrex::Real SolverChoice::gls_c3p = one

Definition at line 1069 of file REMORA_DataStruct.H.

Referenced by REMORA::gls_corrector(), and init_params().

◆ gls_cmu0

amrex::Real SolverChoice::gls_cmu0 = amrex::Real(0.5477)

Definition at line 1065 of file REMORA_DataStruct.H.

Referenced by REMORA::gls_corrector(), and init_params().

◆ gls_E2

amrex::Real SolverChoice::gls_E2 = amrex::Real(1.33)

Definition at line 1087 of file REMORA_DataStruct.H.

Referenced by REMORA::gls_corrector().

◆ gls_Gh0

amrex::Real SolverChoice::gls_Gh0

Definition at line 1084 of file REMORA_DataStruct.H.

Referenced by REMORA::gls_corrector(), and init_params().

◆ gls_Ghcri

amrex::Real SolverChoice::gls_Ghcri

Definition at line 1085 of file REMORA_DataStruct.H.

Referenced by REMORA::gls_corrector(), and init_params().

◆ gls_Ghmin

amrex::Real SolverChoice::gls_Ghmin = amrex::Real(-0.28)

Definition at line 1086 of file REMORA_DataStruct.H.

Referenced by REMORA::gls_corrector().

◆ gls_Kmin

amrex::Real SolverChoice::gls_Kmin = amrex::Real(7.6e-6)

Definition at line 1058 of file REMORA_DataStruct.H.

Referenced by REMORA::gls_corrector(), init_params(), and REMORA::init_stuff().

◆ gls_L1

amrex::Real SolverChoice::gls_L1

Definition at line 1089 of file REMORA_DataStruct.H.

Referenced by REMORA::gls_corrector(), and init_params().

◆ gls_L2

amrex::Real SolverChoice::gls_L2

Definition at line 1090 of file REMORA_DataStruct.H.

Referenced by REMORA::gls_corrector(), and init_params().

◆ gls_L3

amrex::Real SolverChoice::gls_L3

Definition at line 1091 of file REMORA_DataStruct.H.

Referenced by REMORA::gls_corrector(), and init_params().

◆ gls_L4

amrex::Real SolverChoice::gls_L4

Definition at line 1092 of file REMORA_DataStruct.H.

Referenced by REMORA::gls_corrector(), and init_params().

◆ gls_L5

amrex::Real SolverChoice::gls_L5

Definition at line 1093 of file REMORA_DataStruct.H.

Referenced by REMORA::gls_corrector(), and init_params().

◆ gls_L6

amrex::Real SolverChoice::gls_L6

Definition at line 1094 of file REMORA_DataStruct.H.

Referenced by REMORA::gls_corrector(), and init_params().

◆ gls_L7

amrex::Real SolverChoice::gls_L7

Definition at line 1095 of file REMORA_DataStruct.H.

Referenced by REMORA::gls_corrector(), and init_params().

◆ gls_L8

amrex::Real SolverChoice::gls_L8

Definition at line 1096 of file REMORA_DataStruct.H.

Referenced by REMORA::gls_corrector(), and init_params().

◆ gls_length_cap

bool SolverChoice::gls_length_cap = true

Definition at line 1063 of file REMORA_DataStruct.H.

Referenced by REMORA::gls_corrector(), and init_params().

◆ gls_m

amrex::Real SolverChoice::gls_m = amrex::Real(1.5)

Definition at line 1056 of file REMORA_DataStruct.H.

Referenced by REMORA::gls_corrector(), and init_params().

◆ gls_n

amrex::Real SolverChoice::gls_n = amrex::Real(-1.0)

Definition at line 1057 of file REMORA_DataStruct.H.

Referenced by REMORA::gls_corrector(), and init_params().

◆ gls_p

amrex::Real SolverChoice::gls_p = amrex::Real(3.0)

Definition at line 1055 of file REMORA_DataStruct.H.

Referenced by REMORA::gls_corrector(), and init_params().

◆ gls_Pmin

amrex::Real SolverChoice::gls_Pmin = amrex::Real(1.0e-12)

Definition at line 1059 of file REMORA_DataStruct.H.

Referenced by REMORA::gls_corrector(), init_params(), and REMORA::init_stuff().

◆ gls_sigk

amrex::Real SolverChoice::gls_sigk = one

Definition at line 1070 of file REMORA_DataStruct.H.

Referenced by REMORA::gls_corrector(), and init_params().

◆ gls_sigp

amrex::Real SolverChoice::gls_sigp = amrex::Real(1.3)

Definition at line 1071 of file REMORA_DataStruct.H.

Referenced by REMORA::gls_corrector(), and init_params().

◆ gls_stability_type

GLS_StabilityType SolverChoice::gls_stability_type

Definition at line 979 of file REMORA_DataStruct.H.

Referenced by REMORA::gls_corrector(), and init_params().

◆ grid_scale_type

GridScaleType SolverChoice::grid_scale_type

Definition at line 983 of file REMORA_DataStruct.H.

Referenced by init_params(), REMORA::ReadParameters(), and REMORA::set_grid_scale().

◆ Hair

amrex::Real SolverChoice::Hair = amrex::Real(0.776)

Definition at line 1027 of file REMORA_DataStruct.H.

Referenced by init_params(), and REMORA::init_stuff().

◆ harmonic_mixing_type

HarmonicMixingType SolverChoice::harmonic_mixing_type

Definition at line 980 of file REMORA_DataStruct.H.

Referenced by init_params(), and REMORA::t3dmix2().

◆ horiz_mixing_type

HorizMixingType SolverChoice::horiz_mixing_type

Definition at line 977 of file REMORA_DataStruct.H.

Referenced by init_params(), REMORA::set2DPlotVariables(), REMORA::set_hmixcoef(), and REMORA::WriteNCPlotFile_which().

◆ ic_type

IC_Type SolverChoice::ic_type

Definition at line 951 of file REMORA_DataStruct.H.

Referenced by display(), REMORA::init_biology_ic(), REMORA::init_biology_ic_full_domain(), REMORA::init_only(), init_params(), REMORA::ReadParameters(), REMORA::set_bathymetry(), REMORA::set_grid_scale(), and REMORA::set_zeta().

◆ init_ana_T

bool SolverChoice::init_ana_T = false

Definition at line 940 of file REMORA_DataStruct.H.

Referenced by init_params().

◆ init_l0int_T

bool SolverChoice::init_l0int_T = true

Definition at line 942 of file REMORA_DataStruct.H.

Referenced by init_params().

◆ init_l1ad_T

bool SolverChoice::init_l1ad_T = false

Definition at line 938 of file REMORA_DataStruct.H.

Referenced by init_params(), and REMORA::timeStepML().

◆ longwave_down

bool SolverChoice::longwave_down = false

Definition at line 903 of file REMORA_DataStruct.H.

Referenced by REMORA::bulk_fluxes(), init_params(), and REMORA::SetLongwaveFromDriver().

◆ longwave_is_net

bool SolverChoice::longwave_is_net = false

Definition at line 927 of file REMORA_DataStruct.H.

Referenced by REMORA::bulk_fluxes(), init_params(), and REMORA::SetLongwaveFromDriver().

◆ longwave_netcdf_varname

std::string SolverChoice::longwave_netcdf_varname = "lwrad"

Definition at line 929 of file REMORA_DataStruct.H.

Referenced by REMORA::init_only(), and init_params().

◆ longwave_rad

amrex::Real SolverChoice::longwave_rad = zero

Definition at line 1046 of file REMORA_DataStruct.H.

Referenced by init_params(), and REMORA::init_stuff().

◆ mask_consistency

MaskConsistency SolverChoice::mask_consistency

Definition at line 973 of file REMORA_DataStruct.H.

Referenced by REMORA::check_mask_consistency(), and init_params().

◆ mask_type

MaskType SolverChoice::mask_type

Definition at line 969 of file REMORA_DataStruct.H.

Referenced by REMORA::average_down_with_grow_cells(), REMORA::check_mask_consistency(), REMORA::ensure_full_domain_masks(), REMORA::ErrorEst(), REMORA::init_only(), init_params(), REMORA::ReadParameters(), and REMORA::set_masks().

◆ my_A1

amrex::Real SolverChoice::my_A1 = amrex::Real(0.92)

Definition at line 1099 of file REMORA_DataStruct.H.

Referenced by REMORA::gls_corrector().

◆ my_A2

amrex::Real SolverChoice::my_A2 = amrex::Real(0.74)

Definition at line 1100 of file REMORA_DataStruct.H.

Referenced by REMORA::gls_corrector().

◆ my_B1

amrex::Real SolverChoice::my_B1 = amrex::Real(16.6)

Definition at line 1101 of file REMORA_DataStruct.H.

Referenced by REMORA::gls_corrector().

◆ my_B2

amrex::Real SolverChoice::my_B2 = amrex::Real(10.1)

Definition at line 1102 of file REMORA_DataStruct.H.

Referenced by REMORA::gls_corrector().

◆ my_C1

amrex::Real SolverChoice::my_C1 = amrex::Real(0.08)

Definition at line 1103 of file REMORA_DataStruct.H.

Referenced by REMORA::gls_corrector().

◆ my_C2

amrex::Real SolverChoice::my_C2 = amrex::Real(0.7)

Definition at line 1104 of file REMORA_DataStruct.H.

◆ my_C3

amrex::Real SolverChoice::my_C3 = amrex::Real(0.2)

Definition at line 1105 of file REMORA_DataStruct.H.

◆ my_dtfac

amrex::Real SolverChoice::my_dtfac = amrex::Real(0.05)

Definition at line 1110 of file REMORA_DataStruct.H.

◆ my_E1

amrex::Real SolverChoice::my_E1 = amrex::Real(1.8)

Definition at line 1106 of file REMORA_DataStruct.H.

◆ my_E2

amrex::Real SolverChoice::my_E2 = amrex::Real(1.33)

Definition at line 1107 of file REMORA_DataStruct.H.

◆ my_Gh0

amrex::Real SolverChoice::my_Gh0 = amrex::Real(0.0233)

Definition at line 1108 of file REMORA_DataStruct.H.

◆ my_lmax

amrex::Real SolverChoice::my_lmax = amrex::Real(0.53)

Definition at line 1111 of file REMORA_DataStruct.H.

◆ my_qmin

amrex::Real SolverChoice::my_qmin = amrex::Real(1.0E-8)

Definition at line 1112 of file REMORA_DataStruct.H.

◆ my_Sq

amrex::Real SolverChoice::my_Sq = amrex::Real(0.2)

Definition at line 1109 of file REMORA_DataStruct.H.

◆ nudg_coeff

amrex::Vector<amrex::Real> SolverChoice::nudg_coeff

Definition at line 1115 of file REMORA_DataStruct.H.

Referenced by REMORA::init_clim_nudg_coeff(), and init_params().

◆ obcfac

amrex::Real SolverChoice::obcfac = zero

Definition at line 1119 of file REMORA_DataStruct.H.

Referenced by REMORA::fill_from_bdyfiles(), and init_params().

◆ output_forcing

bool SolverChoice::output_forcing = false

Definition at line 900 of file REMORA_DataStruct.H.

Referenced by init_params(), and REMORA::WriteNCPlotFile_which().

◆ Pair

amrex::Real SolverChoice::Pair = amrex::Real(1013.48)

Definition at line 1023 of file REMORA_DataStruct.H.

Referenced by init_params(), and REMORA::init_stuff().

◆ pp_prefix

std::string SolverChoice::pp_prefix {"remora"}

Definition at line 878 of file REMORA_DataStruct.H.

Referenced by init_params().

◆ qair_is_percent

bool SolverChoice::qair_is_percent = false

Definition at line 928 of file REMORA_DataStruct.H.

Referenced by init_params(), and REMORA::set_surface_state().

◆ R0

amrex::Real SolverChoice::R0 = amrex::Real(1028)

Definition at line 1003 of file REMORA_DataStruct.H.

Referenced by init_params(), and REMORA::lin_eos().

◆ rain

amrex::Real SolverChoice::rain = zero

Definition at line 1031 of file REMORA_DataStruct.H.

Referenced by init_params(), and REMORA::init_stuff().

◆ rdrag

amrex::Real SolverChoice::rdrag = amrex::Real(3e-4)

Definition at line 991 of file REMORA_DataStruct.H.

Referenced by init_params(), and REMORA::init_stuff().

◆ rdrag2

amrex::Real SolverChoice::rdrag2 = amrex::Real(3e-3)

Definition at line 993 of file REMORA_DataStruct.H.

Referenced by init_params(), and REMORA::init_stuff().

◆ rho0

amrex::Real SolverChoice::rho0 = amrex::Real(1025.0)

Definition at line 1008 of file REMORA_DataStruct.H.

Referenced by REMORA::advance_2d(), REMORA::advance_biology(), REMORA::ApplyAtmosphericFluxes(), REMORA::bulk_fluxes(), init_params(), REMORA::lin_eos(), REMORA::nonlin_eos(), REMORA::prsgrd(), and REMORA::WriteNCPlotFile_which().

◆ S0

amrex::Real SolverChoice::S0 = amrex::Real(35.0)

Definition at line 1004 of file REMORA_DataStruct.H.

Referenced by init_params(), and REMORA::lin_eos().

◆ scaled_to_grid_amr_scaling

ScaledToGridAMRScaling SolverChoice::scaled_to_grid_amr_scaling = ScaledToGridAMRScaling::none

Definition at line 978 of file REMORA_DataStruct.H.

Referenced by init_params(), and REMORA::set_hmixcoef().

◆ Scoef

amrex::Real SolverChoice::Scoef = zero

Definition at line 1007 of file REMORA_DataStruct.H.

Referenced by init_params(), and REMORA::lin_eos().

◆ smflux_type

SMFluxType SolverChoice::smflux_type

Definition at line 957 of file REMORA_DataStruct.H.

Referenced by REMORA::init_only(), init_params(), and REMORA::set_smflux().

◆ srflux

amrex::Real SolverChoice::srflux = zero

Definition at line 1041 of file REMORA_DataStruct.H.

Referenced by init_params(), and REMORA::init_stuff().

◆ T0

amrex::Real SolverChoice::T0 = amrex::Real(5.0)

Definition at line 1005 of file REMORA_DataStruct.H.

Referenced by init_params(), and REMORA::lin_eos().

◆ Tair

amrex::Real SolverChoice::Tair = amrex::Real(23.567)

Definition at line 1025 of file REMORA_DataStruct.H.

Referenced by init_params(), and REMORA::init_stuff().

◆ tcline

amrex::Real SolverChoice::tcline = amrex::Real(150.0)

Definition at line 988 of file REMORA_DataStruct.H.

Referenced by init_params(), REMORA::stretch_transform(), REMORA::stretch_transform_full_domain(), and REMORA::WriteNCPlotFile_which().

◆ Tcoef

amrex::Real SolverChoice::Tcoef = amrex::Real(1.7e-4)

Definition at line 1006 of file REMORA_DataStruct.H.

Referenced by init_params(), and REMORA::lin_eos().

◆ theta_b

amrex::Real SolverChoice::theta_b = zero

Definition at line 987 of file REMORA_DataStruct.H.

Referenced by REMORA::calc_stretch_coeffs(), init_params(), and REMORA::WriteNCPlotFile_which().

◆ theta_s

amrex::Real SolverChoice::theta_s = amrex::Real(3.0)

Definition at line 986 of file REMORA_DataStruct.H.

Referenced by REMORA::calc_stretch_coeffs(), init_params(), and REMORA::WriteNCPlotFile_which().

◆ time_ref

double SolverChoice::time_ref = 0.0

Definition at line 1016 of file REMORA_DataStruct.H.

Referenced by REMORA::advance_biology(), REMORA::init_bdry_from_netcdf(), REMORA::init_only(), init_params(), and REMORA::WriteNCPlotFile_which().

◆ tnu2

amrex::Vector<amrex::Real> SolverChoice::tnu2

Definition at line 1052 of file REMORA_DataStruct.H.

Referenced by init_params(), and REMORA::set_hmixcoef().

◆ tracer_Hadv_scheme

AdvectionScheme SolverChoice::tracer_Hadv_scheme

Definition at line 944 of file REMORA_DataStruct.H.

Referenced by display(), init_params(), REMORA::prestep_t_advection(), and REMORA::rhs_t_3d().

◆ use_baroclinic

bool SolverChoice::use_baroclinic = true

Definition at line 888 of file REMORA_DataStruct.H.

◆ use_coriolis

bool SolverChoice::use_coriolis = false

Definition at line 883 of file REMORA_DataStruct.H.

Referenced by REMORA::advance_2d(), display(), init_params(), REMORA::ReadParameters(), REMORA::set_coriolis(), and REMORA::setup_step().

◆ use_curvilinear_grid

bool SolverChoice::use_curvilinear_grid = false

Definition at line 890 of file REMORA_DataStruct.H.

Referenced by REMORA::advance_2d(), init_params(), REMORA::init_stuff(), REMORA::set_grid_scale(), and REMORA::setup_step().

◆ use_prestep

bool SolverChoice::use_prestep = true

Definition at line 886 of file REMORA_DataStruct.H.

Referenced by display(), init_params(), and REMORA::setup_step().

◆ use_salt

bool SolverChoice::use_salt = true

Definition at line 880 of file REMORA_DataStruct.H.

Referenced by display(), init_params(), and REMORA::setup_step().

◆ use_uv3dmix

bool SolverChoice::use_uv3dmix = true

Definition at line 887 of file REMORA_DataStruct.H.

Referenced by display(), init_params(), and REMORA::setup_step().

◆ uv_Hadv_scheme

AdvectionScheme SolverChoice::uv_Hadv_scheme

Definition at line 945 of file REMORA_DataStruct.H.

Referenced by display(), init_params(), REMORA::rhs_uv_2d(), and REMORA::rhs_uv_3d().

◆ Uwind

amrex::Real SolverChoice::Uwind = zero

Definition at line 1043 of file REMORA_DataStruct.H.

Referenced by init_params(), and REMORA::init_stuff().

◆ vert_mixing_type

VertMixingType SolverChoice::vert_mixing_type

Definition at line 976 of file REMORA_DataStruct.H.

Referenced by REMORA::advance_3d(), init_params(), REMORA::init_set_vmix(), REMORA::init_stuff(), REMORA::ReadCheckpointFile(), REMORA::setup_step(), and REMORA::WriteCheckpointFile().

◆ visc2

amrex::Real SolverChoice::visc2 = zero

Definition at line 1051 of file REMORA_DataStruct.H.

Referenced by init_params(), and REMORA::set_hmixcoef().

◆ Vwind

amrex::Real SolverChoice::Vwind = zero

Definition at line 1044 of file REMORA_DataStruct.H.

Referenced by init_params(), and REMORA::init_stuff().

◆ wind_type

WindType SolverChoice::wind_type

Definition at line 960 of file REMORA_DataStruct.H.

Referenced by init_params().

◆ Zob

amrex::Real SolverChoice::Zob = amrex::Real(2e-2)

Definition at line 996 of file REMORA_DataStruct.H.

Referenced by init_params(), and REMORA::init_stuff().

◆ Zos

amrex::Real SolverChoice::Zos = amrex::Real(2e-2)

Definition at line 997 of file REMORA_DataStruct.H.

Referenced by REMORA::gls_corrector(), and init_params().

The documentation for this struct was generated from the following file:

/home/runner/work/REMORA/REMORA/Source/REMORA_DataStruct.H

Public Member Functions

Static Public Member Functions

Public Attributes

Detailed Description

Member Function Documentation

◆ display()

◆ init_params()

◆ parse_bulk_forcing_type()

Member Data Documentation

◆ Akk_bak

◆ Akp_bak

◆ Akt_bak

◆ Akt_bak_all

◆ Akv_bak

◆ atm2ocn_flux_mode

◆ blk_ZQ

◆ blk_ZT

◆ blk_ZW

◆ bottom_stress_type

◆ boundary_from_netcdf

◆ bulk_flux_scheme

◆ bulk_flux_type

◆ bulk_flux_type_specified

◆ bulk_flux_value_specified

◆ bulk_fluxes

◆ Cdb_max

◆ Cdb_min

◆ cloud

◆ coriolis_beta

◆ coriolis_f0

◆ coriolis_type

◆ coupling_type

◆ do_any_clim_nudg

◆ do_any_cons_clim_nudg

◆ do_check_mask_consistency

◆ do_cons_clim_nudg

◆ do_m2_clim_nudg

◆ do_m3_clim_nudg

◆ do_rivers

◆ do_rivers_cons

◆ do_rivers_salt

◆ do_rivers_scalar

◆ do_rivers_temp

◆ do_salt_flux

◆ do_temp_flux

◆ eminusp

◆ EminusP

◆ eminusp_correct_ssh

◆ eos_type

◆ g

◆ gls_c1

◆ gls_c2

◆ gls_c3m

◆ gls_c3p

◆ gls_cmu0

◆ gls_E2

◆ gls_Gh0

◆ gls_Ghcri

◆ gls_Ghmin

◆ gls_Kmin

◆ gls_L1

◆ gls_L2

◆ gls_L3

◆ gls_L4

◆ gls_L5

◆ gls_L6

◆ gls_L7

◆ gls_L8

◆ gls_length_cap

◆ gls_m

◆ gls_n

◆ gls_p

◆ gls_Pmin

◆ gls_sigk

◆ gls_sigp

◆ gls_stability_type

◆ grid_scale_type

◆ Hair

◆ harmonic_mixing_type

◆ horiz_mixing_type