Representation of a NetCDF variable. More...

#include <REMORA_NCInterface.H>

Collaboration diagram for ncutils::NCVar:

Public Member Functions
std::string	name () const
	Name of this variable.

int	ndim () const
	Number of array dimensions for this variable.

std::vector< MPI_Offset >	shape () const
	Shape of the array (size in each array dimension)

void	put (const double *ptr) const
	Write out the entire double variable.

void	put (const float *ptr) const
	Write out the entire float variable.

void	put (const int *ptr) const
	Write out the entire int variable.

void	put (const double *dptr, const std::vector< MPI_Offset > &start, const std::vector< MPI_Offset > &count) const
	Write out a slice of data.

void	put_all (const double *dptr, const std::vector< MPI_Offset > &start, const std::vector< MPI_Offset > &count) const
	Write out a slice of data, collective.

void	put_varn_all (int num, MPI_Offset const starts, MPI_Offset const counts, const double *dptr) const

void	put_varn_all (int num, MPI_Offset const starts, MPI_Offset const counts, const float *dptr) const
	Write out `num` subarrays in a single collective call (float overload)

void	iput (const double dptr, const std::vector< MPI_Offset > &start, const std::vector< MPI_Offset > &count, int request) const
	Write out a slice of data with with strides (see hyperslab definition in NetCDF)

void	put (const double *dptr, const std::vector< MPI_Offset > &start, const std::vector< MPI_Offset > &count, const std::vector< MPI_Offset > &stride) const
	Write out a slice of data with with strides.

void	put_all (const double *dptr, const std::vector< MPI_Offset > &start, const std::vector< MPI_Offset > &count, const std::vector< MPI_Offset > &stride) const
	Write out a slice of data with with strides , collective.

void	put (const float *dptr, const std::vector< MPI_Offset > &start, const std::vector< MPI_Offset > &count) const
	Write out a slice of data.

void	put_all (const float *dptr, const std::vector< MPI_Offset > &start, const std::vector< MPI_Offset > &count) const
	Write out a slice of data, collective.

void	put (const float *dptr, const std::vector< MPI_Offset > &start, const std::vector< MPI_Offset > &count, const std::vector< MPI_Offset > &stride) const
	Write out a slice of data with with strides (see hyperslab definition in NetCDF)

void	put_all (const float *dptr, const std::vector< MPI_Offset > &start, const std::vector< MPI_Offset > &count, const std::vector< MPI_Offset > &stride) const
	Write out a slice of data with with strides, collective.

void	put (const int *dptr, const std::vector< MPI_Offset > &start, const std::vector< MPI_Offset > &count) const
	Write out a slice of data.

void	put_all (const int *dptr, const std::vector< MPI_Offset > &start, const std::vector< MPI_Offset > &count) const
	Write out a slice of data, collective.

void	put (const int *dptr, const std::vector< MPI_Offset > &start, const std::vector< MPI_Offset > &count, const std::vector< MPI_Offset > &stride) const
	Write out a slice of data with with strides (see hyperslab definition in NetCDF)

void	put_all (const int *dptr, const std::vector< MPI_Offset > &start, const std::vector< MPI_Offset > &count, const std::vector< MPI_Offset > &stride) const
	Write out a slice of data with with strides, collective.

void	put (const char **dptr, const std::vector< MPI_Offset > &start, const std::vector< MPI_Offset > &count) const
	Write out a slice of string data.

void	put (const char **dptr, const std::vector< MPI_Offset > &start, const std::vector< MPI_Offset > &count, const std::vector< MPI_Offset > &stride) const
	Write out a slice of string data with stride.

void	get (double *ptr) const
	Read the entire variable from file.

void	get (float *ptr) const
	Read the entire variable from file.

void	get (int *ptr) const
	Read the entire variable from file.

void	get (double *dptr, const std::vector< MPI_Offset > &start, const std::vector< MPI_Offset > &count) const
	Read a chunk of data from the file.

void	get_all (double *dptr, const std::vector< MPI_Offset > &start, const std::vector< MPI_Offset > &count) const
	Read a chunk of data from the file, collective.

void	get (double *dptr, const std::vector< MPI_Offset > &start, const std::vector< MPI_Offset > &count, const std::vector< MPI_Offset > &stride) const
	Read a chunk of data with strides.

void	get_all (double *dptr, const std::vector< MPI_Offset > &start, const std::vector< MPI_Offset > &count, const std::vector< MPI_Offset > &stride) const
	Read a chunk of data with strides, collective.

void	get (float *dptr, const std::vector< MPI_Offset > &start, const std::vector< MPI_Offset > &count) const
	Read a chunk of data from the file.

void	get_all (float *dptr, const std::vector< MPI_Offset > &start, const std::vector< MPI_Offset > &count) const
	Read a chunk of data from file, collective.

void	get (float *dptr, const std::vector< MPI_Offset > &start, const std::vector< MPI_Offset > &count, const std::vector< MPI_Offset > &stride) const
	Read a chunk of data with strides.

void	get_all (float *dptr, const std::vector< MPI_Offset > &start, const std::vector< MPI_Offset > &count, const std::vector< MPI_Offset > &stride) const
	Read a chunk of data with strides, collective.

void	get (int *dptr, const std::vector< MPI_Offset > &start, const std::vector< MPI_Offset > &count) const
	Read a chunk of data from the file.

void	get_all (int *dptr, const std::vector< MPI_Offset > &start, const std::vector< MPI_Offset > &count) const
	Read a chunk of data from the file, collective.

void	get (int *dptr, const std::vector< MPI_Offset > &start, const std::vector< MPI_Offset > &count, const std::vector< MPI_Offset > &stride) const
	Read a chunk of data with strides.

void	get_all (int *dptr, const std::vector< MPI_Offset > &start, const std::vector< MPI_Offset > &count, const std::vector< MPI_Offset > &stride) const
	Read a chunk of data with strides, collective.

void	get (char *dptr, const std::vector< MPI_Offset > &start, const std::vector< MPI_Offset > &count) const
	Read a chunk of data from the file.

void	get (char *dptr, const std::vector< MPI_Offset > &start, const std::vector< MPI_Offset > &count, const std::vector< MPI_Offset > &stride) const
	Read a chunk of data with strides.

bool	has_attr (const std::string &name) const
	Whether a variable has an attribute with name.

void	put_attr (const std::string &name, const std::string &value) const
	Set attribute "name" to "value".

void	put_attr (const std::string &name, const std::vector< double > &value) const
	Set attribute "name" to "value".

void	put_attr (const std::string &name, const std::vector< float > &value) const
	Set attribute "name" to "value".

void	put_attr (const std::string &name, const std::vector< int > &value) const
	Set attribute "name" to "value".

std::string	get_attr (const std::string &name) const
	Read attribute from file.

void	get_attr (const std::string &name, std::vector< double > &value) const
	Read attribute from file.

void	get_attr (const std::string &name, std::vector< float > &value) const
	Read attribute from file.

void	get_attr (const std::string &name, std::vector< int > &value) const
	Read attribute from file.

Public Attributes
const int	ncid
	File/Group identifier.

const int	varid
	Variable ID used with NetCDF API.

Detailed Description

Representation of a NetCDF variable.

Definition at line 51 of file REMORA_NCInterface.H.

Member Function Documentation

◆ get() [1/11]

void ncutils::NCVar::get	(	char *	dptr,
		const std::vector< MPI_Offset > &	start,
		const std::vector< MPI_Offset > &	count
	)		const

Read a chunk of data from the file.

Definition at line 256 of file REMORA_NCInterface.cpp.

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◆ get() [2/11]

void ncutils::NCVar::get	(	char *	dptr,
		const std::vector< MPI_Offset > &	start,
		const std::vector< MPI_Offset > &	count,
		const std::vector< MPI_Offset > &	stride
	)		const

Read a chunk of data with strides.

Definition at line 260 of file REMORA_NCInterface.cpp.

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◆ get() [3/11]

void ncutils::NCVar::get	(	double *	dptr,
		const std::vector< MPI_Offset > &	start,
		const std::vector< MPI_Offset > &	count
	)		const

Read a chunk of data from the file.

Definition at line 202 of file REMORA_NCInterface.cpp.

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◆ get() [4/11]

void ncutils::NCVar::get	(	double *	dptr,
		const std::vector< MPI_Offset > &	start,
		const std::vector< MPI_Offset > &	count,
		const std::vector< MPI_Offset > &	stride
	)		const

Read a chunk of data with strides.

Definition at line 210 of file REMORA_NCInterface.cpp.

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◆ get() [5/11]

void ncutils::NCVar::get ( double * ptr ) const

Read the entire variable from file.

Definition at line 190 of file REMORA_NCInterface.cpp.

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◆ get() [6/11]

void ncutils::NCVar::get	(	float *	dptr,
		const std::vector< MPI_Offset > &	start,
		const std::vector< MPI_Offset > &	count
	)		const

Read a chunk of data from the file.

Definition at line 220 of file REMORA_NCInterface.cpp.

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◆ get() [7/11]

void ncutils::NCVar::get	(	float *	dptr,
		const std::vector< MPI_Offset > &	start,
		const std::vector< MPI_Offset > &	count,
		const std::vector< MPI_Offset > &	stride
	)		const

Read a chunk of data with strides.

Definition at line 228 of file REMORA_NCInterface.cpp.

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◆ get() [8/11]

void ncutils::NCVar::get ( float * ptr ) const

Read the entire variable from file.

Definition at line 194 of file REMORA_NCInterface.cpp.

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◆ get() [9/11]

void ncutils::NCVar::get	(	int *	dptr,
		const std::vector< MPI_Offset > &	start,
		const std::vector< MPI_Offset > &	count
	)		const

Read a chunk of data from the file.

Definition at line 238 of file REMORA_NCInterface.cpp.

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◆ get() [10/11]

void ncutils::NCVar::get	(	int *	dptr,
		const std::vector< MPI_Offset > &	start,
		const std::vector< MPI_Offset > &	count,
		const std::vector< MPI_Offset > &	stride
	)		const

Read a chunk of data with strides.

Definition at line 246 of file REMORA_NCInterface.cpp.

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◆ get() [11/11]

void ncutils::NCVar::get ( int * ptr ) const

Read the entire variable from file.

Definition at line 198 of file REMORA_NCInterface.cpp.

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◆ get_all() [1/6]

void ncutils::NCVar::get_all	(	double *	dptr,
		const std::vector< MPI_Offset > &	start,
		const std::vector< MPI_Offset > &	count
	)		const

Read a chunk of data from the file, collective.

Definition at line 206 of file REMORA_NCInterface.cpp.

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◆ get_all() [2/6]

void ncutils::NCVar::get_all	(	double *	dptr,
		const std::vector< MPI_Offset > &	start,
		const std::vector< MPI_Offset > &	count,
		const std::vector< MPI_Offset > &	stride
	)		const

Read a chunk of data with strides, collective.

Definition at line 215 of file REMORA_NCInterface.cpp.

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◆ get_all() [3/6]

void ncutils::NCVar::get_all	(	float *	dptr,
		const std::vector< MPI_Offset > &	start,
		const std::vector< MPI_Offset > &	count
	)		const

Read a chunk of data from file, collective.

Definition at line 224 of file REMORA_NCInterface.cpp.

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◆ get_all() [4/6]

void ncutils::NCVar::get_all	(	float *	dptr,
		const std::vector< MPI_Offset > &	start,
		const std::vector< MPI_Offset > &	count,
		const std::vector< MPI_Offset > &	stride
	)		const

Read a chunk of data with strides, collective.

Definition at line 233 of file REMORA_NCInterface.cpp.

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◆ get_all() [5/6]

void ncutils::NCVar::get_all	(	int *	dptr,
		const std::vector< MPI_Offset > &	start,
		const std::vector< MPI_Offset > &	count
	)		const

Read a chunk of data from the file, collective.

Definition at line 242 of file REMORA_NCInterface.cpp.

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◆ get_all() [6/6]

void ncutils::NCVar::get_all	(	int *	dptr,
		const std::vector< MPI_Offset > &	start,
		const std::vector< MPI_Offset > &	count,
		const std::vector< MPI_Offset > &	stride
	)		const

Read a chunk of data with strides, collective.

Definition at line 251 of file REMORA_NCInterface.cpp.

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◆ get_attr() [1/4]

std::string ncutils::NCVar::get_attr ( const std::string & name ) const

Read attribute from file.

Definition at line 288 of file REMORA_NCInterface.cpp.

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◆ get_attr() [2/4]

void ncutils::NCVar::get_attr	(	const std::string &	name,
		std::vector< double > &	value
	)		const

Read attribute from file.

Definition at line 297 of file REMORA_NCInterface.cpp.

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◆ get_attr() [3/4]

void ncutils::NCVar::get_attr	(	const std::string &	name,
		std::vector< float > &	value
	)		const

Read attribute from file.

Definition at line 304 of file REMORA_NCInterface.cpp.

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◆ get_attr() [4/4]

void ncutils::NCVar::get_attr	(	const std::string &	name,
		std::vector< int > &	value
	)		const

Read attribute from file.

Definition at line 311 of file REMORA_NCInterface.cpp.

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◆ has_attr()

bool ncutils::NCVar::has_attr ( const std::string & name ) const

Whether a variable has an attribute with name.

Definition at line 265 of file REMORA_NCInterface.cpp.

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◆ iput()

void ncutils::NCVar::iput	(	const double *	dptr,
		const std::vector< MPI_Offset > &	start,
		const std::vector< MPI_Offset > &	count,
		int *	request
	)		const

Write out a slice of data with with strides (see hyperslab definition in NetCDF)

Write out a slice of data, non-blocking.

Definition at line 130 of file REMORA_NCInterface.cpp.

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◆ name()

std::string ncutils::NCVar::name ( ) const

Name of this variable.

Definition at line 75 of file REMORA_NCInterface.cpp.

Referenced by get_attr(), get_attr(), get_attr(), get_attr(), has_attr(), put_attr(), put_attr(), put_attr(), and put_attr().

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◆ ndim()

int ncutils::NCVar::ndim ( ) const

Number of array dimensions for this variable.

Definition at line 80 of file REMORA_NCInterface.cpp.

Referenced by shape().

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◆ put() [1/11]

void ncutils::NCVar::put	(	const char **	dptr,
		const std::vector< MPI_Offset > &	start,
		const std::vector< MPI_Offset > &	count
	)		const

Write out a slice of string data.

Definition at line 181 of file REMORA_NCInterface.cpp.

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◆ put() [2/11]

void ncutils::NCVar::put	(	const char **	dptr,
		const std::vector< MPI_Offset > &	start,
		const std::vector< MPI_Offset > &	count,
		const std::vector< MPI_Offset > &	stride
	)		const

Write out a slice of string data with stride.

Definition at line 185 of file REMORA_NCInterface.cpp.

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◆ put() [3/11]

void ncutils::NCVar::put	(	const double *	dptr,
		const std::vector< MPI_Offset > &	start,
		const std::vector< MPI_Offset > &	count
	)		const

Write out a slice of data.

Definition at line 112 of file REMORA_NCInterface.cpp.

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◆ put() [4/11]

void ncutils::NCVar::put	(	const double *	dptr,
		const std::vector< MPI_Offset > &	start,
		const std::vector< MPI_Offset > &	count,
		const std::vector< MPI_Offset > &	stride
	)		const

Write out a slice of data with with strides.

Definition at line 135 of file REMORA_NCInterface.cpp.

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◆ put() [5/11]

void ncutils::NCVar::put ( const double * ptr ) const

Write out the entire double variable.

Definition at line 100 of file REMORA_NCInterface.cpp.

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◆ put() [6/11]

void ncutils::NCVar::put	(	const float *	dptr,
		const std::vector< MPI_Offset > &	start,
		const std::vector< MPI_Offset > &	count
	)		const

Write out a slice of data.

Definition at line 145 of file REMORA_NCInterface.cpp.

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◆ put() [7/11]

void ncutils::NCVar::put	(	const float *	dptr,
		const std::vector< MPI_Offset > &	start,
		const std::vector< MPI_Offset > &	count,
		const std::vector< MPI_Offset > &	stride
	)		const

Write out a slice of data with with strides (see hyperslab definition in NetCDF)

Definition at line 153 of file REMORA_NCInterface.cpp.

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◆ put() [8/11]

void ncutils::NCVar::put ( const float * ptr ) const

Write out the entire float variable.

Definition at line 104 of file REMORA_NCInterface.cpp.

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◆ put() [9/11]

void ncutils::NCVar::put	(	const int *	dptr,
		const std::vector< MPI_Offset > &	start,
		const std::vector< MPI_Offset > &	count
	)		const

Write out a slice of data.

Definition at line 163 of file REMORA_NCInterface.cpp.

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◆ put() [10/11]

void ncutils::NCVar::put	(	const int *	dptr,
		const std::vector< MPI_Offset > &	start,
		const std::vector< MPI_Offset > &	count,
		const std::vector< MPI_Offset > &	stride
	)		const

Write out a slice of data with with strides (see hyperslab definition in NetCDF)

Definition at line 171 of file REMORA_NCInterface.cpp.

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◆ put() [11/11]

void ncutils::NCVar::put ( const int * ptr ) const

Write out the entire int variable.

Definition at line 108 of file REMORA_NCInterface.cpp.

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◆ put_all() [1/6]

void ncutils::NCVar::put_all	(	const double *	dptr,
		const std::vector< MPI_Offset > &	start,
		const std::vector< MPI_Offset > &	count
	)		const

Write out a slice of data, collective.

Definition at line 117 of file REMORA_NCInterface.cpp.

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◆ put_all() [2/6]

void ncutils::NCVar::put_all	(	const double *	dptr,
		const std::vector< MPI_Offset > &	start,
		const std::vector< MPI_Offset > &	count,
		const std::vector< MPI_Offset > &	stride
	)		const

Write out a slice of data with with strides , collective.

Definition at line 140 of file REMORA_NCInterface.cpp.

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◆ put_all() [3/6]

void ncutils::NCVar::put_all	(	const float *	dptr,
		const std::vector< MPI_Offset > &	start,
		const std::vector< MPI_Offset > &	count
	)		const

Write out a slice of data, collective.

Definition at line 149 of file REMORA_NCInterface.cpp.

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◆ put_all() [4/6]

void ncutils::NCVar::put_all	(	const float *	dptr,
		const std::vector< MPI_Offset > &	start,
		const std::vector< MPI_Offset > &	count,
		const std::vector< MPI_Offset > &	stride
	)		const

Write out a slice of data with with strides, collective.

Definition at line 158 of file REMORA_NCInterface.cpp.

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◆ put_all() [5/6]

void ncutils::NCVar::put_all	(	const int *	dptr,
		const std::vector< MPI_Offset > &	start,
		const std::vector< MPI_Offset > &	count
	)		const

Write out a slice of data, collective.

Definition at line 167 of file REMORA_NCInterface.cpp.

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◆ put_all() [6/6]

void ncutils::NCVar::put_all	(	const int *	dptr,
		const std::vector< MPI_Offset > &	start,
		const std::vector< MPI_Offset > &	count,
		const std::vector< MPI_Offset > &	stride
	)		const

Write out a slice of data with with strides, collective.

Definition at line 176 of file REMORA_NCInterface.cpp.

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◆ put_attr() [1/4]

void ncutils::NCVar::put_attr	(	const std::string &	name,
		const std::string &	value
	)		const

Set attribute "name" to "value".

Definition at line 272 of file REMORA_NCInterface.cpp.

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◆ put_attr() [2/4]

void ncutils::NCVar::put_attr	(	const std::string &	name,
		const std::vector< double > &	value
	)		const

Set attribute "name" to "value".

Definition at line 276 of file REMORA_NCInterface.cpp.

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◆ put_attr() [3/4]

void ncutils::NCVar::put_attr	(	const std::string &	name,
		const std::vector< float > &	value
	)		const

Set attribute "name" to "value".

Definition at line 280 of file REMORA_NCInterface.cpp.

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◆ put_attr() [4/4]

void ncutils::NCVar::put_attr	(	const std::string &	name,
		const std::vector< int > &	value
	)		const

Set attribute "name" to "value".

Definition at line 284 of file REMORA_NCInterface.cpp.

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◆ put_varn_all() [1/2]

void ncutils::NCVar::put_varn_all	(	int	num,
		MPI_Offset const	starts,
		MPI_Offset const	counts,
		const double *	dptr
	)		const

Write out num subarrays in a single collective call. Every rank that opened the file must call this, in the same order, but num may differ between ranks and may be zero. starts[i]/counts[i] describe subarray i, and dptr holds all subarrays' data concatenated in that order.

Definition at line 121 of file REMORA_NCInterface.cpp.

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◆ put_varn_all() [2/2]

void ncutils::NCVar::put_varn_all	(	int	num,
		MPI_Offset const	starts,
		MPI_Offset const	counts,
		const float *	dptr
	)		const

Write out num subarrays in a single collective call (float overload)

Definition at line 125 of file REMORA_NCInterface.cpp.

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◆ shape()

std::vector< MPI_Offset > ncutils::NCVar::shape ( ) const

Shape of the array (size in each array dimension)

Definition at line 86 of file REMORA_NCInterface.cpp.

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Member Data Documentation

◆ ncid

const int ncutils::NCVar::ncid

File/Group identifier.

Definition at line 54 of file REMORA_NCInterface.H.

Referenced by get(), get(), get(), get(), get(), get(), get(), get(), get(), get(), get(), get_all(), get_all(), get_all(), get_all(), get_all(), get_all(), get_attr(), get_attr(), get_attr(), get_attr(), has_attr(), iput(), name(), ndim(), put(), put(), put(), put(), put(), put(), put(), put(), put(), put(), put(), put_all(), put_all(), put_all(), put_all(), put_all(), put_all(), put_attr(), put_attr(), put_attr(), put_attr(), put_varn_all(), put_varn_all(), and shape().

◆ varid

const int ncutils::NCVar::varid

Variable ID used with NetCDF API.

Definition at line 57 of file REMORA_NCInterface.H.

Referenced by get(), get(), get(), get(), get(), get(), get(), get(), get(), get(), get(), get_all(), get_all(), get_all(), get_all(), get_all(), get_all(), get_attr(), get_attr(), get_attr(), get_attr(), has_attr(), iput(), name(), ndim(), put(), put(), put(), put(), put(), put(), put(), put(), put(), put(), put(), put_all(), put_all(), put_all(), put_all(), put_all(), put_all(), put_attr(), put_attr(), put_attr(), put_attr(), put_varn_all(), put_varn_all(), and shape().

The documentation for this struct was generated from the following files:

/home/runner/work/REMORA/REMORA/Source/IO/REMORA_NCInterface.H
/home/runner/work/REMORA/REMORA/Source/IO/REMORA_NCInterface.cpp

Public Member Functions

Public Attributes

Detailed Description

Member Function Documentation

◆ get() [1/11]

◆ get() [2/11]

◆ get() [3/11]

◆ get() [4/11]

◆ get() [5/11]

◆ get() [6/11]

◆ get() [7/11]

◆ get() [8/11]

◆ get() [9/11]

◆ get() [10/11]

◆ get() [11/11]

◆ get_all() [1/6]

◆ get_all() [2/6]

◆ get_all() [3/6]

◆ get_all() [4/6]

◆ get_all() [5/6]

◆ get_all() [6/6]

◆ get_attr() [1/4]

◆ get_attr() [2/4]

◆ get_attr() [3/4]

◆ get_attr() [4/4]

◆ has_attr()

◆ iput()

◆ name()

◆ ndim()

◆ put() [1/11]

◆ put() [2/11]

◆ put() [3/11]

◆ put() [4/11]

◆ put() [5/11]

◆ put() [6/11]

◆ put() [7/11]

◆ put() [8/11]

◆ put() [9/11]

◆ put() [10/11]

◆ put() [11/11]

◆ put_all() [1/6]

◆ put_all() [2/6]

◆ put_all() [3/6]

◆ put_all() [4/6]

◆ put_all() [5/6]

◆ put_all() [6/6]

◆ put_attr() [1/4]

◆ put_attr() [2/4]

◆ put_attr() [3/4]

◆ put_attr() [4/4]

◆ put_varn_all() [1/2]

◆ put_varn_all() [2/2]

◆ shape()

Member Data Documentation

◆ ncid

◆ varid