REMORA
Regional Modeling of Oceans Refined Adaptively
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Public Member Functions | Public Attributes | List of all members
REMORABiology::FennelParameters Struct Reference

#include <REMORA_Biology.H>

Collaboration diagram for REMORABiology::FennelParameters:
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Public Member Functions

void init_params (const std::string &remora_prefix)
 

Public Attributes

int BioIter = 1
 
amrex::Real AttSW = amrex::Real(0.04)
 
amrex::Real AttChl = amrex::Real(0.02486)
 
amrex::Real PARfrac = amrex::Real(0.43)
 
amrex::Real Vp0 = amrex::Real(1.0)
 
amrex::Real I_thNH4 = amrex::Real(0.0095)
 
amrex::Real D_p5NH4 = amrex::Real(0.1)
 
amrex::Real NitriR = amrex::Real(0.05)
 
amrex::Real K_NO3 = amrex::Real(2.0)
 
amrex::Real K_NH4 = amrex::Real(2.0)
 
amrex::Real K_PO4 = amrex::Real(32.0)
 
amrex::Real K_Phy = amrex::Real(1.0)
 
amrex::Real Chl2C_m = amrex::Real(0.0535)
 
amrex::Real ChlMin = amrex::Real(0.01)
 
amrex::Real PhyCN = amrex::Real(6.625)
 
amrex::Real R_P2N = amrex::Real(0.0625)
 
amrex::Real PhyIP = amrex::Real(1.5)
 
amrex::Real PhyIS = amrex::Real(0.025)
 
amrex::Real PhyMin = amrex::Real(0.01)
 
amrex::Real PhyMR = amrex::Real(0.15)
 
amrex::Real ZooAE_N = amrex::Real(0.75)
 
amrex::Real ZooCN = amrex::Real(6.625)
 
amrex::Real ZooBM = amrex::Real(0.1)
 
amrex::Real ZooER = amrex::Real(0.1)
 
amrex::Real ZooGR = amrex::Real(0.6)
 
amrex::Real ZooMin = amrex::Real(0.01)
 
amrex::Real ZooMR = amrex::Real(0.025)
 
amrex::Real LDeRRN = amrex::Real(0.01)
 
amrex::Real LDeRRC = amrex::Real(0.01)
 
amrex::Real CoagR = amrex::Real(0.005)
 
amrex::Real SDeRRN = amrex::Real(0.1)
 
amrex::Real SDeRRC = amrex::Real(0.03)
 
amrex::Real wPhy = amrex::Real(0.1)
 
amrex::Real wLDet = amrex::Real(1.0)
 
amrex::Real wSDet = amrex::Real(0.1)
 
amrex::Real RDeRRN = amrex::Real(0.03)
 
amrex::Real RDeRRC = amrex::Real(0.03)
 
amrex::Real pCO2air = amrex::Real(370.0)
 
bool po4 = false
 
bool carbon = false
 
bool oxygen = false
 
bool odu = false
 
bool denitrification = false
 
bool bio_sediment = true
 
bool river_don = false
 
bool talk_nonconserv = false
 
PCO2AirType pco2air_type = PCO2AirType::constant
 
CO2SchmidtType co2_schmidt = CO2SchmidtType::wanninkhof1992
 
O2SchmidtType o2_schmidt = O2SchmidtType::wanninkhof1992
 

Detailed Description

Definition at line 66 of file REMORA_Biology.H.

Member Function Documentation

◆ init_params()

void REMORABiology::FennelParameters::init_params ( const std::string &  remora_prefix)

Definition at line 291 of file REMORA_Biology.cpp.

Referenced by REMORA::ReadParameters().

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Member Data Documentation

◆ AttChl

amrex::Real REMORABiology::FennelParameters::AttChl = amrex::Real(0.02486)

Definition at line 74 of file REMORA_Biology.H.

Referenced by init_params().

◆ AttSW

amrex::Real REMORABiology::FennelParameters::AttSW = amrex::Real(0.04)

Definition at line 71 of file REMORA_Biology.H.

Referenced by init_params().

◆ bio_sediment

bool REMORABiology::FennelParameters::bio_sediment = true

Definition at line 200 of file REMORA_Biology.H.

Referenced by init_params().

◆ BioIter

int REMORABiology::FennelParameters::BioIter = 1

Definition at line 68 of file REMORA_Biology.H.

Referenced by REMORA::advance_biology(), and init_params().

◆ carbon

bool REMORABiology::FennelParameters::carbon = false

Definition at line 187 of file REMORA_Biology.H.

Referenced by init_params(), and REMORABiology::tracer_names().

◆ Chl2C_m

amrex::Real REMORABiology::FennelParameters::Chl2C_m = amrex::Real(0.0535)

Definition at line 104 of file REMORA_Biology.H.

Referenced by init_params().

◆ ChlMin

amrex::Real REMORABiology::FennelParameters::ChlMin = amrex::Real(0.01)

Definition at line 107 of file REMORA_Biology.H.

Referenced by init_params().

◆ co2_schmidt

CO2SchmidtType REMORABiology::FennelParameters::co2_schmidt = CO2SchmidtType::wanninkhof1992

Definition at line 220 of file REMORA_Biology.H.

Referenced by init_params().

◆ CoagR

amrex::Real REMORABiology::FennelParameters::CoagR = amrex::Real(0.005)

Definition at line 155 of file REMORA_Biology.H.

Referenced by init_params().

◆ D_p5NH4

amrex::Real REMORABiology::FennelParameters::D_p5NH4 = amrex::Real(0.1)

Definition at line 86 of file REMORA_Biology.H.

Referenced by init_params().

◆ denitrification

bool REMORABiology::FennelParameters::denitrification = false

Definition at line 197 of file REMORA_Biology.H.

Referenced by init_params().

◆ I_thNH4

amrex::Real REMORABiology::FennelParameters::I_thNH4 = amrex::Real(0.0095)

Definition at line 83 of file REMORA_Biology.H.

Referenced by init_params().

◆ K_NH4

amrex::Real REMORABiology::FennelParameters::K_NH4 = amrex::Real(2.0)

Definition at line 95 of file REMORA_Biology.H.

Referenced by init_params().

◆ K_NO3

amrex::Real REMORABiology::FennelParameters::K_NO3 = amrex::Real(2.0)

Definition at line 92 of file REMORA_Biology.H.

Referenced by init_params().

◆ K_Phy

amrex::Real REMORABiology::FennelParameters::K_Phy = amrex::Real(1.0)

Definition at line 101 of file REMORA_Biology.H.

Referenced by init_params().

◆ K_PO4

amrex::Real REMORABiology::FennelParameters::K_PO4 = amrex::Real(32.0)

Definition at line 98 of file REMORA_Biology.H.

Referenced by init_params().

◆ LDeRRC

amrex::Real REMORABiology::FennelParameters::LDeRRC = amrex::Real(0.01)

Definition at line 152 of file REMORA_Biology.H.

Referenced by init_params().

◆ LDeRRN

amrex::Real REMORABiology::FennelParameters::LDeRRN = amrex::Real(0.01)

Definition at line 149 of file REMORA_Biology.H.

Referenced by init_params().

◆ NitriR

amrex::Real REMORABiology::FennelParameters::NitriR = amrex::Real(0.05)

Definition at line 89 of file REMORA_Biology.H.

Referenced by init_params().

◆ o2_schmidt

O2SchmidtType REMORABiology::FennelParameters::o2_schmidt = O2SchmidtType::wanninkhof1992

Definition at line 221 of file REMORA_Biology.H.

Referenced by init_params().

◆ odu

bool REMORABiology::FennelParameters::odu = false

Definition at line 194 of file REMORA_Biology.H.

Referenced by init_params(), and REMORABiology::tracer_names().

◆ oxygen

bool REMORABiology::FennelParameters::oxygen = false

Definition at line 191 of file REMORA_Biology.H.

Referenced by init_params(), and REMORABiology::tracer_names().

◆ PARfrac

amrex::Real REMORABiology::FennelParameters::PARfrac = amrex::Real(0.43)

Definition at line 77 of file REMORA_Biology.H.

Referenced by init_params().

◆ pCO2air

amrex::Real REMORABiology::FennelParameters::pCO2air = amrex::Real(370.0)

Definition at line 180 of file REMORA_Biology.H.

Referenced by init_params().

◆ pco2air_type

PCO2AirType REMORABiology::FennelParameters::pco2air_type = PCO2AirType::constant

Definition at line 217 of file REMORA_Biology.H.

Referenced by init_params().

◆ PhyCN

amrex::Real REMORABiology::FennelParameters::PhyCN = amrex::Real(6.625)

Definition at line 110 of file REMORA_Biology.H.

Referenced by init_params().

◆ PhyIP

amrex::Real REMORABiology::FennelParameters::PhyIP = amrex::Real(1.5)

Definition at line 116 of file REMORA_Biology.H.

Referenced by init_params().

◆ PhyIS

amrex::Real REMORABiology::FennelParameters::PhyIS = amrex::Real(0.025)

Definition at line 119 of file REMORA_Biology.H.

Referenced by init_params().

◆ PhyMin

amrex::Real REMORABiology::FennelParameters::PhyMin = amrex::Real(0.01)

Definition at line 122 of file REMORA_Biology.H.

Referenced by init_params().

◆ PhyMR

amrex::Real REMORABiology::FennelParameters::PhyMR = amrex::Real(0.15)

Definition at line 125 of file REMORA_Biology.H.

Referenced by init_params().

◆ po4

bool REMORABiology::FennelParameters::po4 = false

Definition at line 183 of file REMORA_Biology.H.

Referenced by init_params(), and REMORABiology::tracer_names().

◆ R_P2N

amrex::Real REMORABiology::FennelParameters::R_P2N = amrex::Real(0.0625)

Definition at line 113 of file REMORA_Biology.H.

Referenced by init_params().

◆ RDeRRC

amrex::Real REMORABiology::FennelParameters::RDeRRC = amrex::Real(0.03)

Definition at line 176 of file REMORA_Biology.H.

Referenced by init_params().

◆ RDeRRN

amrex::Real REMORABiology::FennelParameters::RDeRRN = amrex::Real(0.03)

Definition at line 173 of file REMORA_Biology.H.

Referenced by init_params().

◆ river_don

bool REMORABiology::FennelParameters::river_don = false

Definition at line 205 of file REMORA_Biology.H.

Referenced by init_params(), and REMORABiology::tracer_names().

◆ SDeRRC

amrex::Real REMORABiology::FennelParameters::SDeRRC = amrex::Real(0.03)

Definition at line 161 of file REMORA_Biology.H.

Referenced by init_params().

◆ SDeRRN

amrex::Real REMORABiology::FennelParameters::SDeRRN = amrex::Real(0.1)

Definition at line 158 of file REMORA_Biology.H.

Referenced by init_params().

◆ talk_nonconserv

bool REMORABiology::FennelParameters::talk_nonconserv = false

Definition at line 211 of file REMORA_Biology.H.

Referenced by init_params().

◆ Vp0

amrex::Real REMORABiology::FennelParameters::Vp0 = amrex::Real(1.0)

Definition at line 80 of file REMORA_Biology.H.

Referenced by init_params().

◆ wLDet

amrex::Real REMORABiology::FennelParameters::wLDet = amrex::Real(1.0)

Definition at line 167 of file REMORA_Biology.H.

Referenced by init_params().

◆ wPhy

amrex::Real REMORABiology::FennelParameters::wPhy = amrex::Real(0.1)

Definition at line 164 of file REMORA_Biology.H.

Referenced by init_params().

◆ wSDet

amrex::Real REMORABiology::FennelParameters::wSDet = amrex::Real(0.1)

Definition at line 170 of file REMORA_Biology.H.

Referenced by init_params().

◆ ZooAE_N

amrex::Real REMORABiology::FennelParameters::ZooAE_N = amrex::Real(0.75)

Definition at line 128 of file REMORA_Biology.H.

Referenced by init_params().

◆ ZooBM

amrex::Real REMORABiology::FennelParameters::ZooBM = amrex::Real(0.1)

Definition at line 134 of file REMORA_Biology.H.

Referenced by init_params().

◆ ZooCN

amrex::Real REMORABiology::FennelParameters::ZooCN = amrex::Real(6.625)

Definition at line 131 of file REMORA_Biology.H.

Referenced by init_params().

◆ ZooER

amrex::Real REMORABiology::FennelParameters::ZooER = amrex::Real(0.1)

Definition at line 137 of file REMORA_Biology.H.

Referenced by init_params().

◆ ZooGR

amrex::Real REMORABiology::FennelParameters::ZooGR = amrex::Real(0.6)

Definition at line 140 of file REMORA_Biology.H.

Referenced by init_params().

◆ ZooMin

amrex::Real REMORABiology::FennelParameters::ZooMin = amrex::Real(0.01)

Definition at line 143 of file REMORA_Biology.H.

Referenced by init_params().

◆ ZooMR

amrex::Real REMORABiology::FennelParameters::ZooMR = amrex::Real(0.025)

Definition at line 146 of file REMORA_Biology.H.

Referenced by init_params().

The documentation for this struct was generated from the following files: