- Generated by
1.9.1
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REMORA
Energy Research and Forecasting: An Atmospheric Modeling Code
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This is the complete list of members for REMORA, including all inherited members.
| Advance(int lev, amrex::Real time, amrex::Real dt_lev, int iteration, int ncycle) | REMORA | |
| advance_2d(int lev, amrex::MultiFab const *mf_rhoS, amrex::MultiFab const *mf_rhoA, amrex::MultiFab *mf_ru, amrex::MultiFab *mf_rv, amrex::MultiFab *mf_rufrc, amrex::MultiFab *mf_rvfrc, amrex::MultiFab *mf_Zt_avg1, std::unique_ptr< amrex::MultiFab > &mf_DU_avg1, std::unique_ptr< amrex::MultiFab > &mf_DU_avg2, std::unique_ptr< amrex::MultiFab > &mf_DV_avg1, std::unique_ptr< amrex::MultiFab > &mf_DV_avg2, std::unique_ptr< amrex::MultiFab > &mf_rubar, std::unique_ptr< amrex::MultiFab > &mf_rvbar, std::unique_ptr< amrex::MultiFab > &mf_rzeta, std::unique_ptr< amrex::MultiFab > &mf_ubar, std::unique_ptr< amrex::MultiFab > &mf_vbar, amrex::MultiFab *mf_zeta, amrex::MultiFab const *mf_h, amrex::MultiFab const *mf_pm, amrex::MultiFab const *mf_pn, amrex::MultiFab const *mf_fcor, amrex::MultiFab const *mf_visc2_p, amrex::MultiFab const *mf_visc2_r, const amrex::Real dtfast_lev, const bool predictor_2d_step, const bool first_2d_step, int my_iif, int &next_indx1) | REMORA | |
| advance_2d_onestep(int lev, amrex::Real dt_lev, amrex::Real dtfast_lev, int my_iif, int nfast_counter) | REMORA | |
| advance_3d(int lev, amrex::MultiFab &mf_cons, amrex::MultiFab &mf_u, amrex::MultiFab &mf_v, amrex::MultiFab *mf_sstore, amrex::MultiFab *mf_ru, amrex::MultiFab *mf_rv, std::unique_ptr< amrex::MultiFab > &mf_DU_avg1, std::unique_ptr< amrex::MultiFab > &mf_DU_avg2, std::unique_ptr< amrex::MultiFab > &mf_DV_avg1, std::unique_ptr< amrex::MultiFab > &mf_DV_avg2, std::unique_ptr< amrex::MultiFab > &mf_ubar, std::unique_ptr< amrex::MultiFab > &mf_vbar, std::unique_ptr< amrex::MultiFab > &mf_Akv, std::unique_ptr< amrex::MultiFab > &mf_Akt, std::unique_ptr< amrex::MultiFab > &mf_Hz, std::unique_ptr< amrex::MultiFab > &mf_Huon, std::unique_ptr< amrex::MultiFab > &mf_Hvom, std::unique_ptr< amrex::MultiFab > &mf_z_w, amrex::MultiFab const *mf_h, amrex::MultiFab const *mf_pm, amrex::MultiFab const *mf_pn, const int N, const amrex::Real dt_lev) | REMORA | |
| advance_3d_ml(int lev, amrex::Real dt_lev) | REMORA | |
| advflux_reg | REMORA | private |
| AverageDown() | REMORA | private |
| AverageDownTo(int crse_lev) | REMORA | private |
| bndry_output_planes_interval | REMORA | privatestatic |
| bndry_output_planes_per | REMORA | privatestatic |
| bndry_output_planes_start_time | REMORA | privatestatic |
| boxes_at_level | REMORA | private |
| build_fine_mask(int lev) | REMORA | |
| cfl | REMORA | privatestatic |
| change_max | REMORA | privatestatic |
| check_file | REMORA | private |
| check_int | REMORA | private |
| ClearLevel(int lev) override | REMORA | virtual |
| column_file_name | REMORA | privatestatic |
| column_interval | REMORA | privatestatic |
| column_loc_x | REMORA | privatestatic |
| column_loc_y | REMORA | privatestatic |
| column_per | REMORA | privatestatic |
| ComputeDt() | REMORA | private |
| ComputeGhostCells(const int &spatial_order) | REMORA | inlineprivate |
| cons_names | REMORA | private |
| cons_new | REMORA | |
| cons_old | REMORA | |
| coriolis(const amrex::Box &xbx, const amrex::Box &ybx, const amrex::Array4< amrex::Real const > &uold, const amrex::Array4< amrex::Real const > &vold, const amrex::Array4< amrex::Real > &ru, const amrex::Array4< amrex::Real > &rv, const amrex::Array4< amrex::Real const > &Hz, const amrex::Array4< amrex::Real const > &fomn, int nrhs, int nr) | REMORA | |
| d_havg_density | REMORA | private |
| d_havg_pressure | REMORA | private |
| d_havg_temperature | REMORA | private |
| DataLog(int i) | REMORA | inlineprivate |
| datalog | REMORA | private |
| DataLogName(int i) const noexcept | REMORA | inlineprivate |
| datalogname | REMORA | private |
| derived_names | REMORA | private |
| do_substep | REMORA | private |
| domain_bc_type | REMORA | private |
| domain_bcs_type | REMORA | private |
| domain_bcs_type_d | REMORA | private |
| dt | REMORA | private |
| ErrorEst(int lev, amrex::TagBoxArray &tags, amrex::Real time, int ngrow) override | REMORA | virtual |
| estTimeStep(int lev) const | REMORA | |
| Evolve() | REMORA | |
| fill_from_bdyfiles(amrex::MultiFab &mf_to_fill, const amrex::Real time, const int bdy_var_type) | REMORA | |
| fill_rhs(amrex::MultiFab &rhs_mf, const amrex::MultiFab &state_mf, const amrex::Real time, const amrex::Geometry &geom) | REMORA | private |
| FillCoarsePatch(int lev, amrex::Real time, amrex::MultiFab *mf_fine, amrex::MultiFab *mf_crse) | REMORA | private |
| FillPatch(int lev, amrex::Real time, amrex::MultiFab &mf_to_be_filled, amrex::Vector< amrex::MultiFab * > const &mfs, const int bdy_var_type=BdyVars::null) | REMORA | |
| fine_mask | REMORA | private |
| fixed_dt | REMORA | privatestatic |
| fixed_fast_dt | REMORA | privatestatic |
| fixed_ndtfast_ratio | REMORA | privatestatic |
| getAdvFluxReg(int lev) | REMORA | inlineprivate |
| getCPUTime() const | REMORA | inlineprivate |
| GetDataAtTime(int lev, amrex::Real time) | REMORA | private |
| GotoNextLine(std::istream &is) | REMORA | privatestatic |
| h_havg_density | REMORA | private |
| h_havg_pressure | REMORA | private |
| h_havg_temperature | REMORA | private |
| init1DArrays() | REMORA | private |
| init_bcs() | REMORA | private |
| init_beta_plane_coriolis(int lev) | REMORA | |
| init_custom(int lev) | REMORA | private |
| init_only(int lev, amrex::Real time) | REMORA | |
| init_shrink | REMORA | privatestatic |
| init_stuff(int lev, const amrex::BoxArray &ba, const amrex::DistributionMapping &dm) | REMORA | private |
| InitData() | REMORA | |
| initHSE() | REMORA | private |
| InitializeFromFile() | REMORA | private |
| InitializeLevelFromData(int lev, const amrex::MultiFab &initial_data) | REMORA | private |
| initRayleigh() | REMORA | private |
| input_bndry_planes | REMORA | privatestatic |
| input_sounding_file | REMORA | privatestatic |
| is_it_time_for_action(int nstep, amrex::Real time, amrex::Real dt, int action_interval, amrex::Real action_per) | REMORA | |
| istep | REMORA | private |
| last_check_file_step | REMORA | private |
| last_plot_file_step_1 | REMORA | private |
| last_plot_file_step_2 | REMORA | private |
| m_bc_extdir_vals | REMORA | private |
| MakeNewLevelFromCoarse(int lev, amrex::Real time, const amrex::BoxArray &ba, const amrex::DistributionMapping &dm) override | REMORA | virtual |
| MakeNewLevelFromScratch(int lev, amrex::Real time, const amrex::BoxArray &ba, const amrex::DistributionMapping &dm) override | REMORA | virtual |
| mapfac_m | REMORA | private |
| mapfac_u | REMORA | private |
| mapfac_v | REMORA | private |
| max_step | REMORA | private |
| nc_bdry_file | REMORA | privatestatic |
| nc_grid_file | REMORA | privatestatic |
| nc_init_file | REMORA | privatestatic |
| nfast | REMORA | private |
| nsubsteps | REMORA | private |
| num_boxes_at_level | REMORA | private |
| num_files_at_level | REMORA | private |
| NumDataLogs() noexcept | REMORA | inlineprivate |
| output_1d_column | REMORA | privatestatic |
| output_bndry_planes | REMORA | privatestatic |
| phys_bc_type | REMORA | private |
| physbcs | REMORA | private |
| plot_file_1 | REMORA | private |
| plot_file_2 | REMORA | private |
| plot_file_on_restart | REMORA | private |
| plot_int_1 | REMORA | private |
| plot_int_2 | REMORA | private |
| plot_var_names_1 | REMORA | private |
| plot_var_names_2 | REMORA | private |
| plotfile_type | REMORA | privatestatic |
| PlotFileName(int lev) const | REMORA | private |
| PlotFileVarNames(amrex::Vector< std::string > plot_var_names) const | REMORA | private |
| post_timestep(int nstep, amrex::Real time, amrex::Real dt_lev) | REMORA | |
| post_update(amrex::MultiFab &state_mf, const amrex::Real time, const amrex::Geometry &geom) | REMORA | private |
| pp_prefix | REMORA | |
| prestep(int lev, amrex::MultiFab &mf_uold, amrex::MultiFab &mf_vold, amrex::MultiFab &mf_u, amrex::MultiFab &mf_v, amrex::MultiFab *mf_ru, amrex::MultiFab *mf_rv, amrex::MultiFab &S_old, amrex::MultiFab &S_new, amrex::MultiFab &mf_W, amrex::MultiFab &mf_DC, const amrex::MultiFab *mf_z_r, const amrex::MultiFab *mf_z_w, const amrex::MultiFab *mf_h, const amrex::MultiFab *mf_pm, const amrex::MultiFab *mf_pn, const amrex::MultiFab *mf_sustr, const amrex::MultiFab *mf_svstr, const amrex::MultiFab *mf_bustr, const amrex::MultiFab *mf_bvstr, const int iic, const int nfirst, const int nnew, int nstp, int nrhs, int N, const amrex::Real dt_lev) | REMORA | |
| prestep_diffusion(const amrex::Box &bx, const amrex::Box &gbx, const int ioff, const int joff, const amrex::Array4< amrex::Real > &vel, const amrex::Array4< amrex::Real const > &vel_old, const amrex::Array4< amrex::Real > &rvel, const amrex::Array4< amrex::Real const > &Hz, const amrex::Array4< amrex::Real const > &Akv, const amrex::Array4< amrex::Real > &DC, const amrex::Array4< amrex::Real > &FC, const amrex::Array4< amrex::Real const > &sstr, const amrex::Array4< amrex::Real const > &bstr, const amrex::Array4< amrex::Real const > &z_r, const amrex::Array4< amrex::Real const > &pm, const amrex::Array4< amrex::Real const > &pn, const int iic, const int ntfirst, const int nnew, int nstp, int nrhs, int N, const amrex::Real lambda, const amrex::Real dt_lev) | REMORA | |
| prestep_t_advection(const amrex::Box &tbx, const amrex::Box &gbx, const amrex::Array4< amrex::Real > &tempold, const amrex::Array4< amrex::Real > &tempcache, const amrex::Array4< amrex::Real > &Hz, const amrex::Array4< amrex::Real > &Huon, const amrex::Array4< amrex::Real > &Hvom, const amrex::Array4< amrex::Real > &W, const amrex::Array4< amrex::Real > &DC, const amrex::Array4< amrex::Real > &FC, const amrex::Array4< amrex::Real > &sstore, const amrex::Array4< amrex::Real const > &z_w, const amrex::Array4< amrex::Real const > &h, const amrex::Array4< amrex::Real const > &pm, const amrex::Array4< amrex::Real const > &pn, int iic, int ntfirst, int nrhs, int N, const amrex::Real dt_lev) | REMORA | |
| previousCPUTimeUsed | REMORA | privatestatic |
| prsgrd(const amrex::Box &bx, const amrex::Box &gbx, const amrex::Box &utbx, const amrex::Box &vtbx, const amrex::Array4< amrex::Real > &ru, const amrex::Array4< amrex::Real > &rv, const amrex::Array4< amrex::Real const > &pn, const amrex::Array4< amrex::Real const > &pm, const amrex::Array4< amrex::Real const > &rho, const amrex::Array4< amrex::Real > &FC, const amrex::Array4< amrex::Real const > &Hz, const amrex::Array4< amrex::Real const > &z_r, const amrex::Array4< amrex::Real const > &z_w, const int nrhs, const int N) | REMORA | |
| ReadCheckpointFile() | REMORA | private |
| ReadParameters() | REMORA | private |
| ref_tags | REMORA | privatestatic |
| refinement_criteria_setup() | REMORA | private |
| regrid_int | REMORA | private |
| RemakeLevel(int lev, amrex::Real time, const amrex::BoxArray &ba, const amrex::DistributionMapping &dm) override | REMORA | virtual |
| REMORA() | REMORA | |
| remora_advance(int level, amrex::MultiFab &cons_old, amrex::MultiFab &cons_new, amrex::MultiFab &xvel_old, amrex::MultiFab &yvel_old, amrex::MultiFab &zvel_old, amrex::MultiFab &xvel_new, amrex::MultiFab &yvel_new, amrex::MultiFab &zvel_new, amrex::MultiFab &source, const amrex::Geometry fine_geom, const amrex::Real dt, const amrex::Real time) | REMORA | |
| resize_stuff(int lev) | REMORA | private |
| restart() | REMORA | |
| restart_chkfile | REMORA | private |
| rho_eos(const amrex::Box &bx, const amrex::Array4< amrex::Real const > &state, const amrex::Array4< amrex::Real > &rho, const amrex::Array4< amrex::Real > &rhoA, const amrex::Array4< amrex::Real > &rhoS, const amrex::Array4< amrex::Real const > &Hz, const amrex::Array4< amrex::Real const > &z_w, const amrex::Array4< amrex::Real const > &h, const int N) | REMORA | |
| rhs_t_3d(const amrex::Box &bx, const amrex::Box &gbx, const amrex::Array4< amrex::Real > &t, const amrex::Array4< amrex::Real const > &tempstore, const amrex::Array4< amrex::Real const > &Huon, const amrex::Array4< amrex::Real const > &Hvom, const amrex::Array4< amrex::Real const > &Hz, const amrex::Array4< amrex::Real const > &pn, const amrex::Array4< amrex::Real const > &pm, const amrex::Array4< amrex::Real const > &W, const amrex::Array4< amrex::Real > &FC, int nrhs, int nnew, int N, const amrex::Real dt_lev) | REMORA | |
| rhs_uv_2d(const amrex::Box &xbx, const amrex::Box &ybx, const amrex::Array4< amrex::Real const > &uold, const amrex::Array4< amrex::Real const > &vold, const amrex::Array4< amrex::Real > &ru, const amrex::Array4< amrex::Real > &rv, const amrex::Array4< amrex::Real const > &Duon, const amrex::Array4< amrex::Real const > &Dvom, const int nrhs) | REMORA | |
| rhs_uv_3d(const amrex::Box &xbx, const amrex::Box &ybx, const amrex::Array4< amrex::Real const > &uold, const amrex::Array4< amrex::Real const > &vold, const amrex::Array4< amrex::Real > &ru, const amrex::Array4< amrex::Real > &rv, const amrex::Array4< amrex::Real > &rufrc, const amrex::Array4< amrex::Real > &rvfrc, const amrex::Array4< amrex::Real const > &sustr, const amrex::Array4< amrex::Real const > &svstr, const amrex::Array4< amrex::Real const > &bustr, const amrex::Array4< amrex::Real const > &bvstr, const amrex::Array4< amrex::Real const > &Huon, const amrex::Array4< amrex::Real const > &Hvom, const amrex::Array4< amrex::Real const > &pm, const amrex::Array4< amrex::Real const > &pn, const amrex::Array4< amrex::Real const > &W, const amrex::Array4< amrex::Real > &FC, int nrhs, int N) | REMORA | |
| set_2darrays(int lev) | REMORA | |
| set_bathymetry(int lev) | REMORA | |
| set_coriolis(int lev) | REMORA | |
| set_drag(int lev) | REMORA | |
| set_hmixcoef(int lev) | REMORA | |
| set_smflux(int lev, amrex::Real time) | REMORA | |
| set_vmix(int lev) | REMORA | |
| set_weights(int lev) | REMORA | |
| setPlotVariables(const std::string &pp_plot_var_names, amrex::Vector< std::string > &plot_var_names) | REMORA | private |
| setRecordDataInfo(int i, const std::string &filename) | REMORA | inlineprivate |
| setup_step(int lev, amrex::Real time, amrex::Real dt_lev) | REMORA | |
| solverChoice | REMORA | privatestatic |
| sst | REMORA | private |
| startCPUTime | REMORA | privatestatic |
| stop_time | REMORA | private |
| stretch_transform(int lev) | REMORA | |
| sum_integrated_quantities(amrex::Real time) | REMORA | |
| sum_interval | REMORA | privatestatic |
| sum_per | REMORA | privatestatic |
| t3dmix(const amrex::Box &bx, const amrex::Array4< amrex::Real > &state, const amrex::Array4< amrex::Real const > &diff2, const amrex::Array4< amrex::Real const > &Hz, const amrex::Array4< amrex::Real const > &pm, const amrex::Array4< amrex::Real const > &pn, const amrex::Real dt_lev, const int ncomp) | REMORA | |
| t_new | REMORA | private |
| t_old | REMORA | private |
| timeStep(int lev, amrex::Real time, int iteration) | REMORA | private |
| timeStepML(amrex::Real time, int iteration) | REMORA | private |
| update_massflux_3d(const amrex::Box &bx, const int ioff, const int joff, const amrex::Array4< amrex::Real > &phi, const amrex::Array4< amrex::Real > &phibar, const amrex::Array4< amrex::Real > &Hphi, const amrex::Array4< amrex::Real const > &Hz, const amrex::Array4< amrex::Real const > &pm_or_pn, const amrex::Array4< amrex::Real const > &Dphi1, const amrex::Array4< amrex::Real const > &Dphi2, const amrex::Array4< amrex::Real > &DC, const amrex::Array4< amrex::Real > &FC, const int nnew) | REMORA | |
| use_tracer_particles | REMORA | privatestatic |
| uv3dmix(const amrex::Box &xbx, const amrex::Box &ybx, const amrex::Array4< amrex::Real > &u, const amrex::Array4< amrex::Real > &v, const amrex::Array4< amrex::Real const > &uold, const amrex::Array4< amrex::Real const > &vold, const amrex::Array4< amrex::Real > &rufrc, const amrex::Array4< amrex::Real > &rvfrc, const amrex::Array4< amrex::Real const > &visc2_p, const amrex::Array4< amrex::Real const > &visc2_r, const amrex::Array4< amrex::Real const > &Hz, const amrex::Array4< amrex::Real const > &pm, const amrex::Array4< amrex::Real const > &pn, int nrhs, int nnew, const amrex::Real dt_lev) | REMORA | |
| vec_Akt | REMORA | |
| vec_Akv | REMORA | |
| vec_bustr | REMORA | |
| vec_bvstr | REMORA | |
| vec_diff2 | REMORA | |
| vec_DU_avg1 | REMORA | |
| vec_DU_avg2 | REMORA | |
| vec_DV_avg1 | REMORA | |
| vec_DV_avg2 | REMORA | |
| vec_fcor | REMORA | |
| vec_hOfTheConfusingName | REMORA | |
| vec_Huon | REMORA | |
| vec_Hvom | REMORA | |
| vec_Hz | REMORA | |
| vec_pm | REMORA | |
| vec_pn | REMORA | |
| vec_rdrag | REMORA | |
| vec_rhoA | REMORA | |
| vec_rhoS | REMORA | |
| vec_ru | REMORA | |
| vec_rubar | REMORA | |
| vec_rufrc | REMORA | |
| vec_rv | REMORA | |
| vec_rvbar | REMORA | |
| vec_rvfrc | REMORA | |
| vec_rzeta | REMORA | |
| vec_s_r | REMORA | |
| vec_sstore | REMORA | |
| vec_sustr | REMORA | |
| vec_svstr | REMORA | |
| vec_ubar | REMORA | |
| vec_vbar | REMORA | |
| vec_visc2_p | REMORA | |
| vec_visc2_r | REMORA | |
| vec_visc3d_r | REMORA | |
| vec_weight1 | REMORA | |
| vec_weight2 | REMORA | |
| vec_x_r | REMORA | |
| vec_y_r | REMORA | |
| vec_z_phys_nd | REMORA | |
| vec_z_r | REMORA | |
| vec_z_w | REMORA | |
| vec_zeta | REMORA | |
| vec_Zt_avg1 | REMORA | |
| verbose | REMORA | privatestatic |
| vert_mean_3d(const amrex::Box &bx, const int ioff, const int joff, const amrex::Array4< amrex::Real > &phi, const amrex::Array4< amrex::Real const > &Hz, const amrex::Array4< amrex::Real const > &Dphi_avg1, const amrex::Array4< amrex::Real > &DC, const amrex::Array4< amrex::Real > &CF, const amrex::Array4< amrex::Real const > &dxlen, const int nnew, const int N) | REMORA | |
| vert_visc_3d(const amrex::Box &bx, const int ioff, const int joff, const amrex::Array4< amrex::Real > &phi, const amrex::Array4< amrex::Real const > &Hz, const amrex::Array4< amrex::Real > &Hzk, const amrex::Array4< amrex::Real > &AK, const amrex::Array4< amrex::Real > &Akv, const amrex::Array4< amrex::Real > &BC, const amrex::Array4< amrex::Real > &DC, const amrex::Array4< amrex::Real > &FC, const amrex::Array4< amrex::Real > &CF, const int nnew, const int N, const amrex::Real dt_lev) | REMORA | |
| volWgtSumMF(int lev, const amrex::MultiFab &mf, int comp, bool local, bool finemask) | REMORA | |
| writeBuildInfo(std::ostream &os) | REMORA | static |
| WriteCheckpointFile() const | REMORA | private |
| WriteGenericPlotfileHeaderWithBathymetry(std::ostream &HeaderFile, int nlevels, const amrex::Vector< amrex::BoxArray > &bArray, const amrex::Vector< std::string > &varnames, amrex::Real time, const amrex::Vector< int > &level_steps, const std::string &versionName, const std::string &levelPrefix, const std::string &mfPrefix) const | REMORA | |
| writeJobInfo(const std::string &dir) const | REMORA | |
| WriteMultiLevelPlotfileWithBathymetry(const std::string &plotfilename, int nlevels, const amrex::Vector< const amrex::MultiFab * > &mf, const amrex::Vector< const amrex::MultiFab * > &mf_nd, const amrex::Vector< std::string > &varnames, amrex::Real time, const amrex::Vector< int > &level_steps, const std::string &versionName="HyperCLaw-V1.1", const std::string &levelPrefix="Level_", const std::string &mfPrefix="Cell", const amrex::Vector< std::string > &extra_dirs=amrex::Vector< std::string >()) const | REMORA | |
| WritePlotFile(int which, amrex::Vector< std::string > plot_var_names) | REMORA | |
| xvel_new | REMORA | |
| xvel_old | REMORA | |
| yvel_new | REMORA | |
| yvel_old | REMORA | |
| zvel_new | REMORA | |
| zvel_old | REMORA | |
| ~REMORA() | REMORA | virtual |
1.9.1