REMORA_fennel_roms.F File Reference

#include "remora_bio_cppdefs.h"
#include "REMORA_fennel_mod.h"
#include "REMORA_fennel.h"

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Data Types
type	mod_param::t_bounds
type	mod_grid::t_grid
type	mod_forces::t_forces
type	mod_ocean::t_ocean

Modules
module	mod_kinds
module	mod_param
module	mod_scalars
module	mod_iounits
module	mod_ncparam
module	mod_biology
module	mod_grid
module	mod_forces
module	mod_ocean
module	mod_stepping
module	dateclock_mod
module	biology_mod
module	remora_fennel_isohelper

Functions/Subroutines
subroutine	mod_biology::fennel_tag (tag, iter, istr, iend, j, imins, imaxs, ubk, ubt, bio)
subroutine	mod_biology::fennel_tag_t (tag, iter, istr, iend, j, lbi, ubi, lbj, ubj, ubk, ubt, nnew, t)
subroutine	mod_biology::fennel_tag_line (tag, iter, i, j, k, var, val)
subroutine, public	dateclock_mod::caldate (currenttime, yy_i, yd_i, mm_i, dd_i, h_i, m_i, s_r, yd_dp)
subroutine	remora_fennel_isohelper::fennel_bridge_advance_c (ilo, ihi, jlo, jhi, nz, nbt_in, istr_in, iend_in, jstr_in, jend_in, use_po4, use_carbon, use_oxygen, use_odu, use_denit, use_biosed, use_bulk, use_rivdon, use_talknc, pco2air_kind, co2_sc_kind, o2_sc_kind, bioiter_in, dt_sec, rho0_in, cp_in, p_attsw, p_attchl, p_parfrac, p_vp0, p_i_thnh4, p_d_p5nh4, p_nitrir, p_k_no3, p_k_nh4, p_k_po4, p_k_phy, p_chl2c_m, p_chlmin, p_phycn, p_r_p2n, p_phyip, p_phyis, p_phymin, p_phymr, p_zooae_n, p_zoocn, p_zoobm, p_zooer, p_zoogr, p_zoomin, p_zoomr, p_lderrn, p_lderrc, p_coagr, p_sderrn, p_sderrc, p_rderrn, p_rderrc, p_wphy, p_wldet, p_wsdet, p_pco2air, rmask, hz, z_r, z_w, srflx, sustr, svstr, uwind, vwind, ph, t_nstp, t_nnew, dbg_level, dbg_i, dbg_j)
subroutine	remora_fennel_isohelper::fennel_check_config (nbt_in, use_po4, use_carbon, use_oxygen, use_odu, use_denit, use_biosed, use_bulk, use_rivdon, use_talknc, pco2air_kind, co2_sc_kind, o2_sc_kind)
subroutine	remora_fennel_isohelper::fennel_config_row (name, runtime_val, compiled_val)

Variables
integer, parameter	mod_kinds::i8 = selected_int_kind(8)
integer, parameter	mod_kinds::r4 = selected_real_kind(6, 30)
integer, parameter	mod_kinds::r8 = selected_real_kind(12, 300)
integer, parameter	mod_kinds::dp = selected_real_kind(12, 300)
integer, parameter	mod_param::ngrids = 1
integer, parameter	mod_param::inlm = 1
integer, parameter	mod_param::nat = 2
integer, parameter	mod_param::npt = 0
integer, parameter	mod_param::ncs = 0
integer, parameter	mod_param::nns = 0
integer	mod_param::nbt = 0
integer	mod_param::ndbio2d = 0
integer	mod_param::ndbio3d = 0
integer, dimension(ngrids)	mod_param::n
integer, dimension(ngrids)	mod_param::nt
real(r8), dimension(ngrids)	mod_param::dmem = 0.0_r8
logical, dimension(4)	mod_param::lbiofile = .TRUE.
character(len=256), dimension(4)	mod_param::bioname = ' '
type(t_bounds), dimension(ngrids)	mod_param::bounds
real(r8), parameter	mod_scalars::sec2day = 1.0_r8/86400.0_r8
real(r8), dimension(ngrids)	mod_scalars::dt = 0.0_r8
real(dp), dimension(ngrids)	mod_scalars::tdays = 0.0_dp
integer, dimension(ngrids)	mod_scalars::iic = 0
real(r8)	mod_scalars::rho0 = 1025.0_r8
real(r8)	mod_scalars::cp = 3985.0_r8
integer	mod_scalars::bio_dbg_level = 0
integer	mod_scalars::bio_dbg_i = 0
integer	mod_scalars::bio_dbg_j = 0
integer	mod_iounits::stdout = 6
integer, parameter	mod_ncparam::itemp = 1
integer, parameter	mod_ncparam::isalt = 2
type(t_grid), dimension(ngrids)	mod_grid::grid
type(t_forces), dimension(ngrids)	mod_forces::forces
type(t_ocean), dimension(ngrids)	mod_ocean::ocean
integer, dimension(ngrids)	mod_stepping::nstp = 1
integer, dimension(ngrids)	mod_stepping::nnew = 2