#include "REMORA_NCFile.H"
#include "AMReX_FArrayBox.H"
#include "REMORA_DataStruct.H"

Include dependency graph for REMORA_ReadFromInitNetcdf.cpp:

Functions
void	read_data_from_netcdf (int, const Box &domain, const std::string &fname, FArrayBox &NC_temp_fab, FArrayBox &NC_salt_fab, FArrayBox &NC_xvel_fab, FArrayBox &NC_yvel_fab, FArrayBox &NC_ubar_fab, FArrayBox &NC_vbar_fab)
	helper function for reading in initial state data from netcdf

void	read_zeta_from_netcdf (int, const Box &domain, const std::string &fname, FArrayBox &NC_zeta_fab)
	helper function to read sea surface height from netcdf

void	read_bathymetry_from_netcdf (int, const Box &domain, const std::string &fname, FArrayBox &NC_h_fab, FArrayBox &NC_pm_fab, FArrayBox &NC_pn_fab, FArrayBox &NC_xr_fab, FArrayBox &NC_yr_fab, FArrayBox &NC_xu_fab, FArrayBox &NC_yu_fab, FArrayBox &NC_xv_fab, FArrayBox &NC_yv_fab, FArrayBox &NC_xp_fab, FArrayBox &NC_yp_fab)
	helper function to read bathymetry from netcdf

void	read_coriolis_from_netcdf (int, const Box &domain, const std::string &fname, FArrayBox &NC_fcor_fab)
	helper function to read coriolis factor from netcdf

void	read_masks_from_netcdf (int, const Box &domain, const std::string &fname, FArrayBox &NC_mskr_fab, FArrayBox &NC_msku_fab, FArrayBox &NC_mskv_fab)
	helper function for reading in land-sea masks from netcdf

void	read_clim_nudg_coeff_from_netcdf (int, const Box &domain, const std::string &fname, bool do_m2_clim_nudg, bool do_m3_clim_nudg, bool do_temp_clim_nudg, bool do_salt_clim_nudg, FArrayBox &NC_M2NC_fab, FArrayBox &NC_M3NC_fab, FArrayBox &NC_TempNC_fab, FArrayBox &NC_SaltNC_fab)
	helper function to read climatology nudging from netcdf

void	read_vec_from_netcdf (int, const std::string &fname, const std::string &field_name, amrex::Vector< int > &vec_dat)
	helper function to read in vector of data from netcdf

Function Documentation

◆ read_bathymetry_from_netcdf()

void read_bathymetry_from_netcdf	(	int	lev,
		const Box &	domain,
		const std::string &	fname,
		FArrayBox &	NC_h_fab,
		FArrayBox &	NC_pm_fab,
		FArrayBox &	NC_pn_fab,
		FArrayBox &	NC_xr_fab,
		FArrayBox &	NC_yr_fab,
		FArrayBox &	NC_xu_fab,
		FArrayBox &	NC_yu_fab,
		FArrayBox &	NC_xv_fab,
		FArrayBox &	NC_yv_fab,
		FArrayBox &	NC_xp_fab,
		FArrayBox &	NC_yp_fab
	)

helper function to read bathymetry from netcdf

Parameters

lev	level of data to read
domain	simulation domain
fname	file name to read from
NC_h_fab	container for bathymetry data
NC_pm_fab	container for pm data
NC_pn_fab	container for pn data
NC_xr_fab	container for x_rho data
NC_yr_fab	container for y_rho data
NC_xu_fab	container for x_u data
NC_yu_fab	container for y_u data
NC_xv_fab	container for x_v data
NC_yv_fab	container for y_v data
NC_xp_fab	container for x_p data
NC_yp_fab	container for y_p data

Definition at line 85 of file REMORA_ReadFromInitNetcdf.cpp.

Referenced by REMORA::init_bathymetry_from_netcdf().

Here is the caller graph for this function:

◆ read_clim_nudg_coeff_from_netcdf()

void read_clim_nudg_coeff_from_netcdf	(	int	lev,
		const Box &	domain,
		const std::string &	fname,
		bool	do_m2_clim_nudg,
		bool	do_m3_clim_nudg,
		bool	do_temp_clim_nudg,
		bool	do_salt_clim_nudg,
		FArrayBox &	NC_M2NC_fab,
		FArrayBox &	NC_M3NC_fab,
		FArrayBox &	NC_TempNC_fab,
		FArrayBox &	NC_SaltNC_fab
	)

helper function to read climatology nudging from netcdf

Parameters

lev	level of data to read
domain	simulation domain
fname	file name to read from
do_m2_clim_nudg	whether to do 2d momentum climatology nudging
do_m3_clim_nudg	whether to do 3d momentum climatology nudging
do_temp_clim_nudg	whether to do temperature climatology nudging
do_salt_clim_nudg	whether to do salinity climatology nudging
NC_M2NC_fab	container for 2d momentum climatology data
NC_M3NC_fab	container for 3d momentum climatology data
NC_TempNC_fab	container for temperature climatology data
NC_SaltNC_fab	container for salinity climatology data

Definition at line 185 of file REMORA_ReadFromInitNetcdf.cpp.

Referenced by REMORA::init_clim_nudg_coeff_from_netcdf().

Here is the caller graph for this function:

◆ read_coriolis_from_netcdf()

void read_coriolis_from_netcdf	(	int	lev,
		const Box &	domain,
		const std::string &	fname,
		FArrayBox &	NC_fcor_fab
	)

helper function to read coriolis factor from netcdf

Parameters

lev	level of data to read
domain	simulation domain
fname	file name to read from
NC_fcor_fab	container for Coriolis parameter data

Definition at line 124 of file REMORA_ReadFromInitNetcdf.cpp.

Referenced by REMORA::init_coriolis_from_netcdf().

Here is the caller graph for this function:

◆ read_data_from_netcdf()

void read_data_from_netcdf	(	int	,
		const Box &	domain,
		const std::string &	fname,
		FArrayBox &	NC_temp_fab,
		FArrayBox &	NC_salt_fab,
		FArrayBox &	NC_xvel_fab,
		FArrayBox &	NC_yvel_fab,
		FArrayBox &	NC_ubar_fab,
		FArrayBox &	NC_vbar_fab
	)

helper function for reading in initial state data from netcdf

Parameters

lev	level of data to read
domain	simulation domain
fname	file name to read from
NC_temp_fab	container for temperature data
NC_salt_fab	container for salinity data
NC_u_fab	container for u velocity data
NC_v_fab	container for v velocity data
NC_ubar_fab	container for u_bar velocity data
NC_vbar_fab	container for v_bar velocity data

Definition at line 20 of file REMORA_ReadFromInitNetcdf.cpp.

Referenced by REMORA::init_data_from_netcdf().

Here is the caller graph for this function:

◆ read_masks_from_netcdf()

void read_masks_from_netcdf	(	int	,
		const Box &	domain,
		const std::string &	fname,
		FArrayBox &	NC_mskr_fab,
		FArrayBox &	NC_msku_fab,
		FArrayBox &	NC_mskv_fab
	)

helper function for reading in land-sea masks from netcdf

Parameters

lev	level of data to read
domain	simulation domain
fname	file name to read from
NC_mskr_fab	container for rho-point land/sea mask data
NC_msku_fab	container for u-point land/sea mask data
NC_mskv_fab	container for v-point land/sea mask data