#include <sstream>
#include <string>
#include <ctime>
#include <atomic>
#include "AMReX_FArrayBox.H"
#include "AMReX_IArrayBox.H"
#include "REMORA_NCInterface.H"

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Classes
struct	NDArray< DataType >
	NDArray is the datatype designed to hold any data, including scalars, multidimensional arrays, that read from the NetCDF file. More...

Typedefs
using	PlaneVector = amrex::Vector< amrex::FArrayBox >

Enumerations
enum class	NC_Data_Dims_Type { Time_BT_SN_WE , Time_SN_WE , BT_SN_WE , SN_WE , Time_BT_Riv , Time_Riv , BT_Riv }

Functions
template<typename DType >
void	ReadNetCDFFile (const std::string &fname, amrex::Vector< std::string > names, amrex::Vector< NDArray< DType > > &arrays, bool one_time=false, int fill_time=0)
	Read in data from netcdf file and save to data arrays.

std::string	ReadNetCDFVarAttrStr (const std::string &fname, const std::string &var_name, const std::string &attr_name)
	Helper function for reading a single variable attribute.

template<class FAB , typename DType >
void	fill_fab_from_arrays (int iv, amrex::Vector< NDArray< amrex::Real > > &nc_arrays, const std::string &var_name, NC_Data_Dims_Type &NC_dim_type, FAB &temp)
	Helper function for reading data from NetCDF file into a provided FAB.

template<class FAB , typename DType >
void	BuildFABsFromNetCDFFile (const amrex::Box &domain, const std::string &fname, amrex::Vector< std::string > nc_var_names, amrex::Vector< enum NC_Data_Dims_Type > NC_dim_types, amrex::Vector< FAB * > fab_vars, bool one_time=false, int fill_time=0)
	Function to read NetCDF variables and fill the corresponding Array4's.

Typedef Documentation

◆ PlaneVector

using PlaneVector = amrex::Vector<amrex::FArrayBox>

Definition at line 14 of file REMORA_NCFile.H.

Enumeration Type Documentation

◆ NC_Data_Dims_Type

enum class NC_Data_Dims_Type

strong

Enumerator
Time_BT_SN_WE
Time_SN_WE
BT_SN_WE
SN_WE
Time_BT_Riv
Time_Riv
BT_Riv

Definition at line 16 of file REMORA_NCFile.H.

Function Documentation

◆ BuildFABsFromNetCDFFile()

template<class FAB , typename DType >

void BuildFABsFromNetCDFFile	(	const amrex::Box &	domain,
		const std::string &	fname,
		amrex::Vector< std::string >	nc_var_names,
		amrex::Vector< enum NC_Data_Dims_Type >	NC_dim_types,
		amrex::Vector< FAB * >	fab_vars,
		bool	one_time = `false`,
		int	fill_time = `0`
	)

Function to read NetCDF variables and fill the corresponding Array4's.

Parameters

fname	Name of the NetCDF file to be read
nc_var_names	Variable names in the NetCDF file
NC_dim_types	NetCDF data dimension types
fab_vars	Fab data we are to fill
one_time	Whether to read in a single time step from file
fill_time	What time step to read from file, if only reading one step

Definition at line 316 of file REMORA_NCFile.H.

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◆ fill_fab_from_arrays()

template<class FAB , typename DType >

void fill_fab_from_arrays	(	int	iv,
		amrex::Vector< NDArray< amrex::Real > > &	nc_arrays,
		const std::string &	var_name,
		NC_Data_Dims_Type &	NC_dim_type,
		FAB &	temp
	)

Helper function for reading data from NetCDF file into a provided FAB.

Parameters

iv	Index for which variable we are going to fill
nc_arrays	Arrays of data from NetCDF file
var_name	Variable name
NC_dim_type	Dimension type for the variable as stored in the NetCDF file
temp	FAB where we store the variable data from the NetCDF Arrays

Definition at line 199 of file REMORA_NCFile.H.

◆ ReadNetCDFFile()

template<typename DType >

void ReadNetCDFFile	(	const std::string &	fname,
		amrex::Vector< std::string >	names,
		amrex::Vector< NDArray< DType > > &	arrays,
		bool	one_time = `false`,
		int	fill_time = `0`
	)

Read in data from netcdf file and save to data arrays.

Parameters

[in]	fname	file name to read from
[in]	names	field names to read
[in,out]	arrays	vector of data arrays to fill
[in]	one_time	whether to read in a single time step of data
[in]	fill_time	if reading a single time, what time step to read from the file?